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ASM298221v1

Organism name:
Mycobacterium tuberculosis variant microti (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: ATCC:19422
Infraspecific name:
Strain: ATCC 19422
BioSample:
SAMN06462280
BioProject:
PRJNA377261
Submitter:
ATCC
Date:
2018/03/08
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_002982215.1 (latest)
RefSeq assembly accession:
GCF_002982215.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MWXC01
Assembly method:
Velvet v. 1.2.10
Expected final version:
no
Genome coverage:
20x
Sequencing technology:
Illumina MiSeq

IDs: 1623431 [UID] 6189358 [GenBank] 6223778 [RefSeq]

See Genome Information for Mycobacterium tuberculosis

Pathogen Detection Resources

There are 7743 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::04/12/2017 14:57:17
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,332
CDS (total)::4,281
Genes (coding)::4,095
CDS (coding)::4,095
Genes (RNA)::51
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::45
ncRNAs::3
Pseudo Genes (total)::186
Pseudo Genes (ambiguous residues)::1 of 186
Pseudo Genes (frameshifted)::110 of 186
Pseudo Genes (incomplete)::78 of 186
Pseudo Genes (internal stop)::25 of 186
Pseudo Genes (multiple problems)::23 of 186
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,241,659
Total ungapped length4,241,648
Gaps between scaffolds0
Number of scaffolds258
Scaffold N5027,952
Scaffold L5045
Number of contigs259
Contig N5027,952
Contig L5045
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)258

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced4,241,6592584,241,64827,95210

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Mycobacterium tuberculosis variant microtiMycobacterium tuberculosis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002982275.1Mycobacterium tuberculosis variant pinnipediitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002982275.1Mycobacterium tuberculosistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9298.8296.92
Best-match type99.9298.8296.92

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna