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Source database (GenBank or RefSeq) File type

RchiOBHm-V2

Organism name:

Rosa chinensis (China rose)

Infraspecific name:

Cultivar: Old Blush

BioSample:

SAMN07737764

BioProject:

PRJNA413292

Submitter:

INRA/CNRS

Date:

2019/01/15

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_002994745.2 (latest)

RefSeq assembly accession:

GCF_002994745.2 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: chromosomes MT and Pltd

Data displayed for RefSeq version

WGS Project:

PDCK01

Assembly method:

TIL-R v. Rev: 523; CANU v. 1.6

Expected final version:

Genome coverage:

80.0x

IDs: 2212271 [UID] 8255808 [GenBank] 25073658 [RefSeq]

See Genome Information for Rosa chinensis

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002994745.2	≠	GCF_002994745.2	RchiOBHm-V2	Chromosome	Latest GenBank, Latest RefSeq
GCA_002994745.1	≠	GCF_002994745.1	RchiOBHm-V2	Chromosome	Replaced GenBank, Replaced RefSeq

Comment

In January 2019 additional sequences (PDCK01000048-PDCK01000055) were added to this 01 version of PDCK00000000

Global statistics

Total sequence length	515,118,979
Total ungapped length	515,115,679
Gaps between scaffolds	0
Number of scaffolds	53
Scaffold N50	69,643,165
Scaffold L50	4
Number of contigs	86
Contig N50	22,201,688
Contig L50	9
Total number of chromosomes and plasmids	7
Number of component sequences (WGS or clone)	53

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM009582.1	=	NC_037088.1	0
Chromosome 2	CM009583.1	=	NC_037089.1	0
Chromosome 3	CM009584.1	=	NC_037090.1	0
Chromosome 4	CM009585.1	=	NC_037091.1	0
Chromosome 5	CM009586.1	=	NC_037092.1	0
Chromosome 6	CM009587.1	=	NC_037093.1	0
Chromosome 7	CM009588.1	=	NC_037094.1	0
unplaced	n/a	n/a	n/a	46

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	515,118,979	53	515,115,679	69,643,165	33
Chromosome 1	68,490,202	1	68,489,802	68,490,202	4
Chromosome 2	88,556,329	1	88,555,429	88,556,329	9
Chromosome 3	49,737,312	1	49,737,212	49,737,312	1
Chromosome 4	67,241,324	1	67,241,124	67,241,324	2
Chromosome 5	89,953,796	1	89,953,196	89,953,796	6
Chromosome 6	69,643,165	1	69,642,565	69,643,165	6
Chromosome 7	70,290,800	1	70,290,300	70,290,800	5
unplaced	11,206,051	46	11,206,051	251,379	0

Assembly

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RchiOBHm-V2

See Genome Information for Rosa chinensis

Pathogen Detection Resources

History (Show revision history)

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