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ASM300102v1

Organism name:
Escherichia sp. R15 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: R15
BioSample:
SAMN08473892
BioProject:
PRJNA433283
Submitter:
Zhejiang Chinese Medical University
Date:
2018/03/14
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_003001025.1 (latest)
RefSeq assembly accession:
GCF_003001025.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PSSH01
Assembly method:
SPAdes v. OCT-2017
Expected final version:
yes
Genome coverage:
134.076214x
Sequencing technology:
Illumina HiSeq

IDs: 1631591 [UID] 6226798 [GenBank] 6246608 [RefSeq]

See Genome Information for Escherichia sp. R15

History (Show revision history)

Comment

Global statistics

Total sequence length5,121,407
Total ungapped length5,121,407
Number of contigs140
Contig N50109,435
Contig L5013
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)140

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,121,4071405,121,407109,43500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia sp. R15Escherichia sp. R15

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000210475.1Escherichia colicladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.2985.2781.99

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna