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ASM301447v1

Organism name:
Shimia abyssi (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 100673
BioSample:
SAMN07621369
BioProject:
PRJNA402510
Submitter:
DOE Joint Genome Institute
Date:
2018/03/23
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003014475.1 (latest)
RefSeq assembly accession:
GCF_003014475.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PYGJ01
Assembly method:
SPAdes v. 3.9.0
Expected final version:
no
Genome coverage:
205.0x
Sequencing technology:
Illumina HiSeq

IDs: 1649281 [UID] 6287778 [GenBank] 6294748 [RefSeq]

See Genome Information for Shimia abyssi

History (Show revision history)

Comment

Global statistics

Total sequence length4,732,601
Total ungapped length4,732,601
Number of contigs48
Contig N50190,888
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)48

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,732,601484,732,601190,88800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Shimia abyssiShimia abyssi

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900114635.1Shimia aestuariitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type80.6111.6613.05

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected