Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

Tu2.1

Organism name:

Triticum urartu (monocots)

Infraspecific name:

Cultivar: G1812

BioSample:

SAMN05513572

BioProject:

PRJNA337888

Submitter:

Institute of Genetics and Developmental Biology Chinese Academy of Sciences

Date:

2018/04/30

Release type:

minor

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_003073215.2 (latest)

RefSeq assembly accession:

GCF_003073215.2 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome Pltd

Data displayed for RefSeq version

WGS Project:

MKGO01

Assembly method:

MaSuRCA v. 3.2

Expected final version:

Genome coverage:

335.0x

Sequencing technology:

Illumina HiSeq; PacBio

IDs: 12658441 [UID] 33123838 [GenBank] 33123858 [RefSeq]

See Genome Information for Triticum urartu

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003073215.2	≠	GCF_003073215.2	Tu2.1	Chromosome	Latest GenBank, Latest RefSeq
GCA_003073215.1	n/a	n/a	Tu2.0	Chromosome	Replaced GenBank

Comment

A BioNano optical map was used to generate this assembly
In May 2022 80 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length	4,849,192,930
Total ungapped length	4,818,907,346
Gaps between scaffolds	0
Number of scaffolds	10,205
Scaffold N50	661,480,603
Scaffold L50	4
Number of contigs	44,014
Contig N50	278,604
Contig L50	5,048
Total number of chromosomes and plasmids	8
Number of component sequences (WGS or clone)	10,205

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM009793.1	=	NC_053022.1	0
Chromosome 2	CM009794.1	=	NC_053023.1	0
Chromosome 3	CM009795.1	=	NC_053024.1	0
Chromosome 4	CM009796.1	=	NC_053025.1	0
Chromosome 5	CM009797.1	=	NC_053026.1	0
Chromosome 6	CM009798.1	=	NC_053027.1	0
Chromosome 7	CM009799.1	=	NC_053028.1	0
unplaced	n/a	n/a	n/a	10,197

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	4,849,077,157	10,204	4,818,791,573	661,480,603	33,809
Chromosome 1	584,211,917	1	580,354,903	584,211,917	4,282
Chromosome 2	753,719,114	1	748,882,663	753,719,114	5,422
Chromosome 3	747,046,674	1	742,100,667	747,046,674	5,511
Chromosome 4	619,584,425	1	615,560,433	619,584,425	4,454
Chromosome 5	661,480,603	1	657,296,097	661,480,603	4,710
Chromosome 6	575,865,107	1	572,261,404	575,865,107	4,077
Chromosome 7	719,689,837	1	714,855,926	719,689,837	5,353
unplaced	187,479,480	10,197	187,479,480	20,675	0

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Send to:

Download Assembly

Tu2.1

See Genome Information for Triticum urartu

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

PubMed articles for this assembly

Recent activity

Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear