U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM315117v1

Organism name:
Gammaproteobacteria bacterium ESL0073 (g-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: ESL0073
BioSample:
SAMN08297259
BioProject:
PRJNA471810
Submitter:
University of Lausanne
Date:
2018/05/24
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Excluded from RefSeq:
  • genus undefined
GenBank assembly accession:
GCA_003151175.1 (latest)
RefSeq assembly accession:
GCF_003151175.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 2.3
Expected final version:
yes
Genome coverage:
70.0x
Sequencing technology:
PacBio

IDs: 1717851 [UID] 6541448 [GenBank] 6566278 [RefSeq]

See Genome Information for Gammaproteobacteria bacterium ESL0073

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Philipp Engel, University of Lausanne, department of fundamental microbiology.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::05/18/2018 10:08:36
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,115
CDS (total)::3,049
Genes (coding)::2,911
CDS (coding)::2,911
Genes (RNA)::66
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::50
ncRNAs::4
Pseudo Genes (total)::138
Pseudo Genes (ambiguous residues)::0 of 138
Pseudo Genes (frameshifted)::110 of 138
Pseudo Genes (incomplete)::21 of 138
Pseudo Genes (internal stop)::17 of 138
Pseudo Genes (multiple problems)::9 of 138
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,301,370
Total ungapped length3,301,370
Total number of chromosomes and plasmids1

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_003151185.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP029478.1=NZ_CP029478.1

Assembly statistics

MoleculeTotal
Length
Chromosome 3,301,370

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Gammaproteobacteria bacterium ESL0073Gammaproteobacteria bacterium ESL0073

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003991975.1Entomomonas moraniaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type96.7886.4885.54

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelineage-matchna