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ASM320120v1

Organism name:
Sinimarinibacterium flocculans (g-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: DSM 104150
BioSample:
SAMN08776298
BioProject:
PRJNA442665
Submitter:
DOE Joint Genome Institute
Date:
2018/06/07
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003201205.1 (latest)
RefSeq assembly accession:
GCF_003201205.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QICN01
Assembly method:
SPAdes v. 3.10.1
Expected final version:
no
Genome coverage:
195.0x
Sequencing technology:
Illumina HiSeq

IDs: 1739251 [UID] 6612168 [GenBank] 6619258 [RefSeq]

See Genome Information for Sinimarinibacterium flocculans

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length4,401,070
Total ungapped length4,400,877
Gaps between scaffolds0
Number of scaffolds39
Scaffold N50360,159
Scaffold L504
Number of contigs41
Contig N50260,599
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)39

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,401,070394,400,877360,15920

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Sinimarinibacterium flocculansSinimarinibacterium flocculans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000474945.1Solimonas solitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.3114.4815.23

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna