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Amel_HAv3.1

Organism name:
Apis mellifera (honey bee)
Infraspecific name:
Strain: DH4
Sex:
male
BioSample:
SAMN09259743
BioProject:
PRJNA471592
Submitter:
Uppsala University
Date:
2018/09/10
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_003254395.2 (latest)
RefSeq assembly accession:
GCF_003254395.2 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Different: chromosome MT.
  • Data displayed for RefSeq version
WGS Project:
QIUM02
Assembly method:
FALCON v. 0.5.0; Arcs v. 1.0.1; Links v. 1.8.5; BioNano Solve v. 3.1
Expected final version:
yes
Genome coverage:
192.0x
Sequencing technology:
PacBio; 10X Chromium; Phase Genomics HiC; Bionano

IDs: 1949871 [UID] 7372188 [GenBank] 7434688 [RefSeq]

See Genome Information for Apis mellifera

Pathogen Detection Resources

There are 7 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length225,250,884
Total ungapped length223,937,270
Gaps between scaffolds0
Number of scaffolds177
Scaffold N5013,619,445
Scaffold L507
Number of contigs228
Contig N505,382,476
Contig L5013
Total number of chromosomes and plasmids17
Number of component sequences (WGS or clone)228

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_003254405.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Linkage Group LG1CM009931.2=NC_037638.10
Linkage Group LG2CM009932.2=NC_037639.11
Linkage Group LG3CM009933.2=NC_037640.10
Linkage Group LG4CM009934.2=NC_037641.10
Linkage Group LG5CM009935.2=NC_037642.11
Linkage Group LG6CM009936.2=NC_037643.11
Linkage Group LG7CM009937.2=NC_037644.13
Linkage Group LG8CM009938.2=NC_037645.13
Linkage Group LG9CM009939.2=NC_037646.117
Linkage Group LG10CM009940.2=NC_037647.17
Linkage Group LG11CM009941.2=NC_037648.15
Linkage Group LG12CM009942.2=NC_037649.11
Linkage Group LG13CM009943.2=NC_037650.10
Linkage Group LG14CM009944.2=NC_037651.114
Linkage Group LG15CM009945.2=NC_037652.118
Linkage Group LG16CM009946.2=NC_037653.10
unplacedn/an/an/a89

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule225,234,541176223,920,92713,619,445510
Linkage Group LG1Assembled molecule27,754,200127,674,71027,754,20090
Linkage Group LG2AllAssembled moleculeUnlocalized scaffolds16,093,50016,089,5123,98821116,074,25116,070,2633,98816,089,51216,089,5123,988110000
Linkage Group LG3Assembled molecule13,619,445113,594,20713,619,44510
Linkage Group LG4Assembled molecule13,404,451113,404,45113,404,45100
Linkage Group LG5AllAssembled moleculeUnlocalized scaffolds13,920,98413,896,94124,04321113,870,40513,846,36224,04313,896,94113,896,94124,043330000
Linkage Group LG6AllAssembled moleculeUnlocalized scaffolds17,812,98317,789,10223,88121117,679,06017,655,17923,88117,789,10217,789,10223,881660000
Linkage Group LG7AllAssembled moleculeUnlocalized scaffolds14,262,38214,198,69863,68441314,262,18214,198,49863,68414,198,69814,198,69822,163110000
Linkage Group LG8AllAssembled moleculeUnlocalized scaffolds12,786,76912,717,21069,55941312,744,18112,674,62269,55912,717,21012,717,21040,528440000
Linkage Group LG9AllAssembled moleculeUnlocalized scaffolds12,729,96112,354,651375,3101811712,709,52712,334,217375,31012,354,65112,354,65126,859220000
Linkage Group LG10AllAssembled moleculeUnlocalized scaffolds12,657,13412,360,052297,08281711,936,57111,639,489297,08212,360,05212,360,05267,913990000
Linkage Group LG11AllAssembled moleculeUnlocalized scaffolds16,444,88716,352,60092,28761516,307,54416,215,25792,28716,352,60016,352,60024,609440000
Linkage Group LG12AllAssembled moleculeUnlocalized scaffolds11,533,13711,514,23418,90321111,521,07411,502,17118,90311,514,23411,514,23418,903220000
Linkage Group LG13Assembled molecule11,279,722111,264,42411,279,72250
Linkage Group LG14AllAssembled moleculeUnlocalized scaffolds10,910,03910,670,842239,1971511410,909,62110,670,424239,19710,670,84210,670,84219,344220000
Linkage Group LG15AllAssembled moleculeUnlocalized scaffolds9,922,4739,534,514387,959191189,922,4739,534,514387,9599,534,5149,534,51435,241000000
Linkage Group LG16Assembled molecule7,238,53217,182,3047,238,53220
unplacedAssembled molecule2,863,942892,863,94256,97100
MoleculeTotal
Length
Mitochondrion MT16,343