U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM325472v2

Organism name:
Canis lupus dingo (dingo)
Isolate:
Sandy
Sex:
female
BioSample:
SAMN09397198
BioProject:
PRJNA475652
Submitter:
James Cook University
Date:
2020/09/11
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_003254725.2 (latest)
RefSeq assembly accession:
GCF_003254725.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QKWQ02
Assembly method:
FALCON v. 2017
Expected final version:
yes
Genome coverage:
60.0x
Sequencing technology:
PacBio Sequel; BioNano; Illumina (10X Chromium)

IDs: 8061501 [UID] 22055618 [GenBank] 33886048 [RefSeq]

See Genome Information for Canis lupus

Pathogen Detection Resources

There are 27 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,349,862,946
Total ungapped length2,349,829,267
Gaps between scaffolds0
Number of scaffolds159
Scaffold N5064,250,934
Scaffold L5014
Number of contigs228
Contig N5040,716,615
Contig L5020
Total number of chromosomes and plasmids39
Number of component sequences (WGS or clone)159

Supplemental Content

Access the data

Assembly Information

Related Information

PubMed articles for this assembly

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003254735.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM025457.1=NC_064243.10
Chromosome 2CM025458.1=NC_064244.10
Chromosome 3CM025459.1=NC_064245.10
Chromosome 4CM025460.1=NC_064246.10
Chromosome 5CM025461.1=NC_064247.10
Chromosome 6CM025462.1=NC_064248.10
Chromosome 7CM025463.1=NC_064249.10
Chromosome 8CM025464.1=NC_064250.10
Chromosome 9CM025465.1=NC_064251.12
Chromosome 10CM025466.1=NC_064252.10
Chromosome 11CM025467.1=NC_064253.11
Chromosome 12CM025468.1=NC_064254.10
Chromosome 13CM025469.1=NC_064255.10
Chromosome 14CM025470.1=NC_064256.11
Chromosome 15CM025471.1=NC_064257.10
Chromosome 16CM025472.1=NC_064258.11
Chromosome 17CM025473.1=NC_064259.11
Chromosome 18CM025474.1=NC_064260.10
Chromosome 19CM025475.1=NC_064261.11
Chromosome 20CM025476.1=NC_064262.10
Chromosome 21CM025477.1=NC_064263.10
Chromosome 22CM025478.1=NC_064264.10
Chromosome 23CM025479.1=NC_064265.10
Chromosome 24CM025480.1=NC_064266.10
Chromosome 25CM025481.1=NC_064267.10
Chromosome 26CM025482.1=NC_064268.10
Chromosome 27CM025483.1=NC_064269.10
Chromosome 28CM025484.1=NC_064270.10
Chromosome 29CM025485.1=NC_064271.10
Chromosome 30CM025486.1=NC_064272.10
Chromosome 31CM025487.1=NC_064273.10
Chromosome 32CM025488.1=NC_064274.10
Chromosome 33CM025489.1=NC_064275.10
Chromosome 34CM025490.1=NC_064276.10
Chromosome 35CM025491.1=NC_064277.10
Chromosome 36CM025492.1=NC_064278.10
Chromosome 37CM025493.1=NC_064279.10
Chromosome 38CM025494.1=NC_064280.10
Chromosome XCM025495.1=NC_064281.10
unplacedn/an/an/a113

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule2,349,862,9461592,349,829,26764,250,934690
Chromosome 1Assembled molecule122,846,5481122,846,548122,846,54800
Chromosome 2Assembled molecule84,161,879184,160,94484,161,87920
Chromosome 3Assembled molecule92,112,102192,111,60292,112,10210
Chromosome 4Assembled molecule88,751,237188,750,73788,751,23710
Chromosome 5Assembled molecule88,975,722188,975,22288,975,72210
Chromosome 6Assembled molecule77,389,880177,389,88077,389,88000
Chromosome 7Assembled molecule80,964,893180,963,95080,964,89320
Chromosome 8Assembled molecule75,025,400175,024,96175,025,40010
Chromosome 9AllAssembled moleculeUnlocalized scaffolds62,631,79862,372,504259,29431262,626,36662,367,572258,79462,372,50462,372,504201,67211101000
Chromosome 10Assembled molecule70,303,238170,302,23870,303,23820
Chromosome 11AllAssembled moleculeUnlocalized scaffolds73,994,29773,962,80031,49721173,991,79773,960,30031,49773,962,80073,962,80031,497550000
Chromosome 12Assembled molecule72,820,849172,818,34972,820,84950
Chromosome 13Assembled molecule63,733,378163,732,37863,733,37820
Chromosome 14AllAssembled moleculeUnlocalized scaffolds60,971,51660,902,48269,03421160,971,01660,901,98269,03460,902,48260,902,48269,034110000
Chromosome 15Assembled molecule64,340,940164,340,94064,340,94000
Chromosome 16AllAssembled moleculeUnlocalized scaffolds60,732,75160,689,78142,97021160,731,82460,688,85442,97060,689,78160,689,78142,970220000
Chromosome 17AllAssembled moleculeUnlocalized scaffolds64,333,49564,250,93482,56121164,332,49564,249,93482,56164,250,93464,250,93482,561220000
Chromosome 18Assembled molecule55,811,215155,810,27855,811,21520
Chromosome 19AllAssembled moleculeUnlocalized scaffolds54,897,94654,725,329172,61721154,896,44654,723,829172,61754,725,32954,725,329172,617330000
Chromosome 20Assembled molecule58,534,657158,533,65758,534,65720
Chromosome 21Assembled molecule51,370,042151,369,09651,370,04220
Chromosome 22Assembled molecule61,557,832161,557,33261,557,83210
Chromosome 23Assembled molecule52,657,147152,656,64752,657,14710
Chromosome 24Assembled molecule47,825,920147,825,92047,825,92000
Chromosome 25Assembled molecule51,624,444151,624,44451,624,44400
Chromosome 26Assembled molecule38,223,929138,222,92938,223,92920
Chromosome 27Assembled molecule46,269,335146,269,33546,269,33500
Chromosome 28Assembled molecule41,422,395141,422,39541,422,39500
Chromosome 29Assembled molecule42,053,747142,053,74742,053,74700
Chromosome 30Assembled molecule40,491,884140,491,38440,491,88410
Chromosome 31Assembled molecule39,828,470139,827,97039,828,47010
Chromosome 32Assembled molecule38,911,704138,911,70438,911,70400
Chromosome 33Assembled molecule31,627,141131,626,64131,627,14110
Chromosome 34Assembled molecule42,266,120142,265,62042,266,12010
Chromosome 35Assembled molecule26,814,678126,814,17826,814,67810
Chromosome 36Assembled molecule31,052,517131,052,51731,052,51700
Chromosome 37Assembled molecule31,329,281131,328,78131,329,28110
Chromosome 38Assembled molecule24,565,883124,565,88324,565,88300
Chromosome XAssembled molecule124,621,6081124,615,988124,621,608120
unplacedAssembled molecule12,015,12811312,015,128146,61600