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DnovRS2.1

Organism name:
Drosophila novamexicana (flies)
Infraspecific name:
Strain: 15010-1031.04,08,12
Sex:
pooled male and female
BioSample:
SAMN09383009
BioProject:
PRJNA475270
Submitter:
University of Arizona/ University of Chiago/ Cornell University
Date:
2018/10/23
Release type:
minor
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_003285875.3 (latest)
RefSeq assembly accession:
GCF_003285875.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QMEP02
Assembly method:
MECAT v. 1.3; Pilon v. 1.18
Expected final version:
no
Genome coverage:
165.0x
Sequencing technology:
PacBio Sequel; Illumina

IDs: 3890371 [UID] 12231138 [GenBank] 13434848 [RefSeq]

See Genome Information for Drosophila novamexicana

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

Contigs QMEP02000012, QMEP02000013, QMEP02000016, QMEP02000019, QMEP02000020, QMEP02000021, QMEP02000022, QMEP02000023, QMEP02000024, QMEP02000026, QMEP02000027, QMEP02000028, QMEP02000029, QMEP02000030, QMEP02000031, QMEP02000032, QMEP02000033, QMEP02000034, QMEP02000035, QMEP02000036, QMEP02000286, QMEP02000287, and QMEP02000288 were removed on July 2019 because they may contain contamination.

Global statistics

Total sequence length177,223,868
Total ungapped length177,223,868
Number of contigs269
Contig N503,158,326
Contig L5018
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)269

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced177,223,868269177,223,8683,158,32600