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Source database (GenBank or RefSeq) File type

ASM336829v1

Organism name:

Carassius auratus (goldfish)

Infraspecific name:

Strain: Wakin

BioSample:

SAMN09670328

BioProject:

PRJNA481500

Submitter:

National Institutes of Health

Date:

2018/08/09

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_003368295.1 (latest)

RefSeq assembly accession:

GCF_003368295.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Different: chromosome MT.

Data displayed for RefSeq version

WGS Project:

QPKE01

Assembly method:

Canu v. 1.5

Expected final version:

Genome coverage:

71.0x

Sequencing technology:

PacBio RSII

IDs: 1860851 [UID] 7049688 [GenBank] 7202898 [RefSeq]

See Genome Information for Carassius auratus

Pathogen Detection Resources

There are 6 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003368295.1	≠	GCF_003368295.1	ASM336829v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	1,820,635,050
Total ungapped length	1,820,410,350
Gaps between scaffolds	0
Number of scaffolds	6,216
Scaffold N50	22,763,433
Scaffold L50	32
Number of contigs	8,463
Contig N50	821,153
Contig L50	513
Total number of chromosomes and plasmids	60
Number of component sequences (WGS or clone)	8,463

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM010432.1	=	NC_039243.1	0
Chromosome 2	CM010433.1	=	NC_039244.1	0
Chromosome 3	CM010434.1	=	NC_039245.1	0
Chromosome 4	CM010435.1	=	NC_039246.1	0
Chromosome 5	CM010436.1	=	NC_039247.1	0
Chromosome 6	CM010437.1	=	NC_039248.1	0
Chromosome 7	CM010438.1	=	NC_039249.1	0
Chromosome 8	CM010439.1	=	NC_039250.1	0
Chromosome 9	CM010440.1	=	NC_039251.1	0
Chromosome 10	CM010441.1	=	NC_039252.1	0
Chromosome 11	CM010442.1	=	NC_039253.1	0
Chromosome 12	CM010443.1	=	NC_039254.1	0
Chromosome 13	CM010444.1	=	NC_039255.1	0
Chromosome 14	CM010445.1	=	NC_039256.1	0
Chromosome 15	CM010446.1	=	NC_039257.1	0
Chromosome 16	CM010447.1	=	NC_039258.1	0
Chromosome 17	CM010448.1	=	NC_039259.1	0
Chromosome 18	CM010449.1	=	NC_039260.1	0
Chromosome 19	CM010450.1	=	NC_039261.1	0
Chromosome 20	CM010451.1	=	NC_039262.1	0
Chromosome 21	CM010452.1	=	NC_039263.1	0
Chromosome 22	CM010453.1	=	NC_039264.1	0
Chromosome 23	CM010454.1	=	NC_039265.1	0
Chromosome 24	CM010455.1	=	NC_039266.1	0
Chromosome 25	CM010456.1	=	NC_039267.1	0
Chromosome 26	CM010457.1	=	NC_039268.1	0
Chromosome 27	CM010458.1	=	NC_039269.1	0
Chromosome 28	CM010459.1	=	NC_039270.1	0
Chromosome 29	CM010460.1	=	NC_039271.1	0
Chromosome 30	CM010461.1	=	NC_039272.1	0
Chromosome 31	CM010462.1	=	NC_039273.1	0
Chromosome 32	CM010463.1	=	NC_039274.1	0
Chromosome 33	CM010464.1	=	NC_039275.1	0
Chromosome 34	CM010465.1	=	NC_039276.1	0
Chromosome 35	CM010466.1	=	NC_039277.1	0
Chromosome 36	CM010467.1	=	NC_039278.1	0
Chromosome 37	CM010468.1	=	NC_039279.1	0
Chromosome 38	CM010469.1	=	NC_039280.1	0
Chromosome 39	CM010470.1	=	NC_039281.1	0
Chromosome 40	CM010471.1	=	NC_039282.1	0
Chromosome 41	CM010472.1	=	NC_039283.1	0
Chromosome 42	CM010473.1	=	NC_039284.1	0
Chromosome 43	CM010474.1	=	NC_039285.1	0
Chromosome 44	CM010475.1	=	NC_039286.1	0
Chromosome 45	CM010476.1	=	NC_039287.1	0
Chromosome 46	CM010477.1	=	NC_039288.1	0
Chromosome 47	CM010478.1	=	NC_039289.1	0
Chromosome 48	CM010479.1	=	NC_039290.1	0
Chromosome 49	CM010480.1	=	NC_039291.1	0
Chromosome 50	CM010481.1	=	NC_039292.1	0
Linkage Group LG28B	CM010482.1	=	NC_039293.1	0
Linkage Group LG30F	CM010483.1	=	NC_039294.1	0
Linkage Group LG36F	CM010484.1	=	NC_039295.1	0
Linkage Group LG37M	CM010485.1	=	NC_039296.1	0
Linkage Group LG42F	CM010486.1	=	NC_039297.1	0
Linkage Group LG44F	CM010487.1	=	NC_039298.1	0
Linkage Group LG45M	CM010488.1	=	NC_039299.1	0
Linkage Group LG48F	CM010489.1	=	NC_039300.1	0
Linkage Group LG49B	CM010490.1	=	NC_039301.1	0
unplaced	n/a	n/a	n/a	6,156

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,820,618,472	6,215	1,820,393,772	22,763,433	2,247
Chromosome 1	34,767,119	1	34,763,419	34,767,119	37
Chromosome 2	30,202,465	1	30,192,065	30,202,465	104
Chromosome 3	30,025,718	1	30,019,418	30,025,718	63
Chromosome 4	29,272,933	1	29,267,733	29,272,933	52
Chromosome 5	33,106,987	1	33,103,687	33,106,987	33
Chromosome 6	28,243,444	1	28,241,044	28,243,444	24
Chromosome 7	36,166,994	1	36,164,394	36,166,994	26
Chromosome 8	30,839,439	1	30,834,339	30,839,439	51
Chromosome 9	37,185,075	1	37,178,175	37,185,075	69
Chromosome 10	21,934,901	1	21,928,901	21,934,901	60
Chromosome 11	18,527,230	1	18,522,630	18,527,230	46
Chromosome 12	21,321,462	1	21,318,162	21,321,462	33
Chromosome 13	26,064,016	1	26,057,616	26,064,016	64
Chromosome 14	33,730,237	1	33,724,637	33,730,237	56
Chromosome 15	25,409,663	1	25,405,963	25,409,663	37
Chromosome 16	28,066,004	1	28,064,504	28,066,004	15
Chromosome 17	27,648,303	1	27,643,003	27,648,303	53
Chromosome 18	24,856,083	1	24,853,883	24,856,083	22
Chromosome 19	29,339,562	1	29,334,862	29,339,562	47
Chromosome 20	28,624,141	1	28,616,341	28,624,141	78
Chromosome 21	26,264,146	1	26,259,146	26,264,146	50
Chromosome 22	34,770,970	1	34,763,070	34,770,970	79
Chromosome 23	19,885,177	1	19,881,577	19,885,177	36
Chromosome 24	23,179,244	1	23,174,544	23,179,244	47
Chromosome 25	23,425,583	1	23,418,183	23,425,583	74
Chromosome 26	24,197,505	1	24,194,805	24,197,505	27
Chromosome 27	31,526,900	1	31,521,200	31,526,900	57
Chromosome 28	26,792,464	1	26,788,264	26,792,464	42
Chromosome 29	23,600,900	1	23,595,400	23,600,900	55
Chromosome 30	29,823,080	1	29,819,580	29,823,080	35
Chromosome 31	28,379,948	1	28,377,048	28,379,948	29
Chromosome 32	35,735,308	1	35,731,108	35,735,308	42
Chromosome 33	4,846,060	1	4,844,360	4,846,060	17
Chromosome 34	27,839,488	1	27,837,688	27,839,488	18
Chromosome 35	19,819,111	1	19,815,711	19,819,111	34
Chromosome 36	20,707,324	1	20,703,624	20,707,324	37
Chromosome 37	18,527,871	1	18,524,371	18,527,871	35
Chromosome 38	24,425,221	1	24,421,021	24,425,221	42
Chromosome 39	13,306,270	1	13,303,270	13,306,270	30
Chromosome 40	20,943,373	1	20,939,673	20,943,373	37
Chromosome 41	26,728,495	1	26,721,895	26,728,495	66
Chromosome 42	18,503,708	1	18,498,708	18,503,708	50
Chromosome 43	22,763,433	1	22,760,533	22,763,433	29
Chromosome 44	15,572,452	1	15,568,652	15,572,452	38
Chromosome 45	19,898,032	1	19,891,632	19,898,032	64
Chromosome 46	19,235,564	1	19,232,464	19,235,564	31
Chromosome 47	15,834,824	1	15,832,724	15,834,824	21
Chromosome 48	11,625,070	1	11,620,270	11,625,070	48
Chromosome 49	16,732,928	1	16,731,028	16,732,928	19
Chromosome 50	20,714,917	1	20,711,517	20,714,917	34
Linkage Group LG28B	10,089,910	1	10,086,910	10,089,910	30
Linkage Group LG30F	5,157,558	1	5,157,358	5,157,558	2
Linkage Group LG36F	2,125,864	1	2,125,764	2,125,864	1
Linkage Group LG37M	809,220	1	809,220	809,220	0
Linkage Group LG42F	242,804	1	242,704	242,804	1
Linkage Group LG44F	7,155,423	1	7,155,023	7,155,423	4
Linkage Group LG45M	2,302,222	1	2,301,422	2,302,222	8
Linkage Group LG48F	3,710,289	1	3,709,789	3,710,289	5
Linkage Group LG49B	1,381,152	1	1,380,852	1,381,152	3
unplaced	546,706,888	6,156	546,706,888	163,833	0

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ASM336829v1

See Genome Information for Carassius auratus

Pathogen Detection Resources

There are 6 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear