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Source database (GenBank or RefSeq) File type

UOA_Brahman_1

Organism name:

Bos indicus x Bos taurus (hybrid cattle)

Infraspecific name:

Breed: Angus x Brahman F1 hybrid

Sex:

male

BioSample:

SAMN08473802

BioProject:

PRJNA432857

Submitter:

University of Adelaide

Date:

2018/11/30

Assembly type:

alternate-pseudohaplotype

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_003369695.2 (latest)

RefSeq assembly accession:

GCF_003369695.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: chromosome MT

Data displayed for RefSeq version

WGS Project:

PUFS02

Assembly method:

TrioCanu v. 1.6

Expected final version:

yes

Genome coverage:

136.0x

Sequencing technology:

PacBio Sequel; PacBio RSII; Illumina NextSeq

Linked assembly:

GCA_003369685.2 (principal pseudohaplotype of diploid)

IDs: 2125961 [UID] 7969888 [GenBank] 8054268 [RefSeq]

See Genome Information for Bos indicus x Bos taurus

Pathogen Detection Resources

There are 8 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003369695.2	≠	GCF_003369695.1	UOA_Brahman_1	Chromosome	Latest GenBank, Latest RefSeq
GCA_003369695.1	n/a	n/a	Bos_hybrid_MaternalHap_v1.0	Contig	Replaced GenBank

Comment

This assembly represents the Bos taurus indicus (maternal) haplotype and includes the autosomes plus the X chromosome and mitochondria. The paternal haplotype sequences are in WGS project PUFT00000000.

Global statistics

Total sequence length	2,680,953,056
Total ungapped length	2,679,316,559
Gaps between scaffolds	0
Number of scaffolds	1,250
Scaffold N50	104,466,507
Scaffold L50	11
Number of contigs	1,552
Contig N50	26,764,281
Contig L50	32
Total number of chromosomes and plasmids	30
Number of component sequences (WGS or clone)	1,250

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM011804.1	=	NC_040076.1	0
Chromosome 2	CM011805.1	=	NC_040077.1	0
Chromosome 3	CM011806.1	=	NC_040078.1	0
Chromosome 4	CM011807.1	=	NC_040079.1	0
Chromosome 5	CM011808.1	=	NC_040080.1	0
Chromosome 6	CM011809.1	=	NC_040081.1	0
Chromosome 7	CM011810.1	=	NC_040082.1	0
Chromosome 8	CM011811.1	=	NC_040083.1	0
Chromosome 9	CM011812.1	=	NC_040084.1	0
Chromosome 10	CM011813.1	=	NC_040085.1	0
Chromosome 11	CM011814.1	=	NC_040086.1	0
Chromosome 12	CM011815.1	=	NC_040087.1	0
Chromosome 13	CM011816.1	=	NC_040088.1	0
Chromosome 14	CM011817.1	=	NC_040089.1	0
Chromosome 15	CM011818.1	=	NC_040090.1	0
Chromosome 16	CM011819.1	=	NC_040091.1	0
Chromosome 17	CM011820.1	=	NC_040092.1	0
Chromosome 18	CM011821.1	=	NC_040093.1	0
Chromosome 19	CM011822.1	=	NC_040094.1	0
Chromosome 20	CM011823.1	=	NC_040095.1	0
Chromosome 21	CM011824.1	=	NC_040096.1	0
Chromosome 22	CM011825.1	=	NC_040097.1	0
Chromosome 23	CM011826.1	=	NC_040098.1	0
Chromosome 24	CM011827.1	=	NC_040099.1	0
Chromosome 25	CM011828.1	=	NC_040100.1	0
Chromosome 26	CM011829.1	=	NC_040101.1	0
Chromosome 27	CM011830.1	=	NC_040102.1	0
Chromosome 28	CM011831.1	=	NC_040103.1	0
Chromosome 29	CM011832.1	=	NC_040104.1	0
Chromosome X	CM011833.1	=	NC_040105.1	0
unplaced	n/a	n/a	n/a	1,220

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,680,953,056	1,250	2,679,316,559	104,466,507	302
Chromosome 1	156,943,404	1	156,940,879	156,943,404	6
Chromosome 2	135,844,732	1	135,842,207	135,844,732	6
Chromosome 3	120,786,946	1	120,782,446	120,786,946	9
Chromosome 4	119,487,020	1	119,484,020	119,487,020	6
Chromosome 5	120,179,969	1	120,174,919	120,179,969	12
Chromosome 6	117,220,384	1	117,216,884	117,220,384	7
Chromosome 7	110,433,717	1	110,430,717	110,433,717	6
Chromosome 8	113,109,275	1	113,105,250	113,109,275	9
Chromosome 9	104,466,507	1	104,462,482	104,466,507	9
Chromosome 10	103,156,416	1	103,150,416	103,156,416	12
Chromosome 11	106,190,332	1	106,189,282	106,190,332	4
Chromosome 12	86,744,025	1	86,739,525	86,744,025	9
Chromosome 13	83,353,338	1	83,349,338	83,353,338	8
Chromosome 14	82,466,886	1	82,461,886	82,466,886	10
Chromosome 15	84,270,218	1	84,268,193	84,270,218	5
Chromosome 16	80,235,084	1	80,230,534	80,235,084	11
Chromosome 17	72,619,036	1	72,617,975	72,619,036	3
Chromosome 18	62,583,388	1	62,578,888	62,583,388	9
Chromosome 19	64,467,025	1	64,463,525	64,467,025	7
Chromosome 20	71,581,568	1	71,580,043	71,581,568	4
Chromosome 21	69,837,837	1	69,835,812	69,837,837	5
Chromosome 22	59,995,071	1	59,994,071	59,995,071	2
Chromosome 23	53,510,974	1	53,509,474	53,510,974	3
Chromosome 24	62,414,538	1	62,413,038	62,414,538	3
Chromosome 25	42,605,158	1	42,604,158	42,605,158	2
Chromosome 26	51,310,239	1	51,309,739	51,310,239	1
Chromosome 27	45,108,716	1	45,105,216	45,108,716	7
Chromosome 28	45,896,848	1	45,895,848	45,896,848	2
Chromosome 29	51,254,507	1	51,252,507	51,254,507	4
Chromosome X	146,092,946	1	146,049,346	146,092,946	91
unplaced	56,786,952	1,220	55,277,941	48,803	30

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UOA_Brahman_1

See Genome Information for Bos indicus x Bos taurus

Pathogen Detection Resources

There are 8 assemblies for this organism

History (Show revision history)

Comment

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