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D.miranda_PacBio2.1

Organism name:
Drosophila miranda (flies)
Infraspecific name:
Strain: MSH22
Sex:
male
BioSample:
SAMN09375764
BioProject:
PRJNA474939
Submitter:
Bachtrog Lab, UC Berkeley
Date:
2019/09/23
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_003369915.2 (latest)
RefSeq assembly accession:
GCF_003369915.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QNQS02
Assembly method:
FALCON v. 1.7.5; Canu v. Jan-2017
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
PacBio

IDs: 4693271 [UID] 14011648 [GenBank] 18528548 [RefSeq]

See Genome Information for Drosophila miranda

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length287,096,000
Total ungapped length287,090,273
Gaps between scaffolds0
Number of scaffolds104
Scaffold N5035,263,383
Scaffold L504
Number of contigs222
Contig N5011,978,448
Contig L507
Total number of chromosomes and plasmids7
Number of component sequences (WGS or clone)104

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003369985.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome XLCM010493.2=NC_046673.10
Chromosome XRCM010494.2=NC_046674.10
Chromosome 2CM010495.2=NC_046675.10
Chromosome 3CM010496.2=NC_046676.10
Chromosome 4CM010497.2=NC_046677.10
Chromosome 5CM010498.2=NC_046678.10
Chromosome Yn/an/an/a62
unplacedn/an/an/a36

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule287,096,000104287,090,27335,263,3831180
Chromosome XLAssembled molecule25,342,487125,342,33725,342,48730
Chromosome XRAssembled molecule52,279,357152,278,90752,279,35790
Chromosome 2Assembled molecule35,263,383135,263,38335,263,38300
Chromosome 3Assembled molecule25,306,191125,306,19125,306,19100
Chromosome 4Assembled molecule32,539,841132,539,79132,539,84110
Chromosome 5Assembled molecule2,366,01612,366,0162,366,01600
Chromosome YAllAssembled moleculeUnlocalized scaffolds110,504,8170110,504,81762062110,499,9900110,499,99037,200,578037,200,5781000100000
unplacedAssembled molecule3,493,908363,493,658487,53250