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Source database (GenBank or RefSeq) File type

ASM343140v1

Organism name:: Actinobacillus pleuropneumoniae (g-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: KL 16
BioSample:: SAMN07420505
BioProject:: PRJNA396072
Submitter:: KBNP,INC.
Date:: 2017/08/16
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_003431405.1 (latest)
RefSeq assembly accession:: GCF_003431405.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: HGAP v. 3
Expected final version:: yes
Genome coverage:: 328.0x
Sequencing technology:: PacBio

IDs: 1907201 [UID] 7201148 [GenBank] 7264418 [RefSeq]

See Genome Information for Actinobacillus pleuropneumoniae

Pathogen Detection Resources

There are 88 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003431405.1	=	GCF_003431405.1	ASM343140v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::01/17/2024 11:39:35
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,258
CDSs (total)::2,170
Genes (coding)::2,112
CDSs (with protein)::2,112
Genes (RNA)::88
rRNAs::7, 6, 6 (5S, 16S, 23S)
complete rRNAs::7, 6, 6 (5S, 16S, 23S)
tRNAs::65
ncRNAs::4
Pseudo Genes (total)::58
CDSs (without protein)::58
Pseudo Genes (ambiguous residues)::0 of 58
Pseudo Genes (frameshifted)::31 of 58
Pseudo Genes (incomplete)::23 of 58
Pseudo Genes (internal stop)::14 of 58
Pseudo Genes (multiple problems)::10 of 58
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,365,505
Total ungapped length	2,365,505
Total number of chromosomes and plasmids	2

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP022715.1	=	NZ_CP022715.1
Plasmid unnamed1	CP022716.1	=	NZ_CP022716.1

Molecule	Total Length
All	2,365,505
Chromosome	2,357,806
Plasmid unnamed1	7,699

	ANI	Query coverage	Subject coverage
Declared type	99.85	96.92	98.88
Best-match type	99.85	96.92	98.88

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ASM343140v1

See Genome Information for Actinobacillus pleuropneumoniae

Pathogen Detection Resources

There are 88 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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