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Source database (GenBank or RefSeq) File type

MtrunA17r5.0-ANR

Organism name:

Medicago truncatula (barrel medic)

Infraspecific name:

Cultivar: Jemalong A17

BioSample:

SAMN08400029

BioProject:

PRJNA431767

Submitter:

INRA/CNRS

Date:

2018/09/12

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_003473485.2 (latest)

RefSeq assembly accession:

GCF_003473485.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosomes MT and Pltd

Data displayed for RefSeq version

WGS Project:

PSQE01

Assembly method:

CANU v. 1.3; PBcR v. wqs-8.3rc1; FALCON v. 0.7

Expected final version:

Genome coverage:

109.0x

IDs: 1978551 [UID] 7445598 [GenBank] 25036168 [RefSeq]

See Genome Information for Medicago truncatula

Pathogen Detection Resources

There are 6 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003473485.2	≠	GCF_003473485.1	MtrunA17r5.0-ANR	Chromosome	Latest GenBank, Latest RefSeq
GCA_003473485.1	n/a	n/a	MtrunA17r5.0-ANR	Chromosome	Replaced GenBank

Comment

In September 2018 aditional sequences (PSQE01000032-PSQE01000040) were added to this 01 version of PSQE00000000.

Global statistics

Total sequence length	430,008,013
Total ungapped length	429,433,753
Gaps between scaffolds	0
Number of scaffolds	42
Scaffold N50	56,236,587
Scaffold L50	4
Number of contigs	64
Contig N50	23,305,320
Contig L50	7
Total number of chromosomes and plasmids	10
Number of component sequences (WGS or clone)	42

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM010648.1	=	NC_053042.1	0
Chromosome 2	CM010649.1	=	NC_053043.1	0
Chromosome 3	CM010650.1	=	NC_053044.1	0
Chromosome 4	CM010651.1	=	NC_053045.1	0
Chromosome 5	CM010652.1	=	NC_053046.1	0
Chromosome 6	CM010653.1	=	NC_053047.1	0
Chromosome 7	CM010654.1	=	NC_053048.1	0
Chromosome 8	CM010655.1	=	NC_053049.1	0
unplaced	n/a	n/a	n/a	32

Molecule name	GenBank ID		RefSeq ID
Mitochondrion MT	KT971339.1	=	NC_029641.1
Plastid Pltd	AC093544.7	=	NC_003119.8

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	429,612,362	40	429,038,102	56,236,587	22
Chromosome 1	56,706,830	1	56,686,830	56,706,830	1
Chromosome 2	51,972,579	1	51,876,307	51,972,579	6
Chromosome 3	58,931,556	1	58,911,556	58,931,556	1
Chromosome 4	64,763,011	1	64,676,563	64,763,011	2
Chromosome 5	44,819,618	1	44,758,410	44,819,618	3
Chromosome 6	42,866,092	1	42,615,760	42,866,092	7
Chromosome 7	56,236,587	1	56,216,587	56,236,587	1
Chromosome 8	49,719,271	1	49,699,271	49,719,271	1
unplaced	3,596,818	32	3,596,818	597,968	0

Molecule	Total Length
All	395,651
Mitochondrion MT	271,618
Plastid Pltd	124,033

Assembly

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MtrunA17r5.0-ANR

See Genome Information for Medicago truncatula

Pathogen Detection Resources

There are 6 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear