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ASM357447v2

Organism name:
Pseudofrancisella aestuarii (g-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: SYSU WZ-2
BioSample:
SAMN09381310
BioProject:
PRJNA475174
Submitter:
Traditional Chinese Medicine University of Guangzhou
Date:
2019/12/31
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003574475.2 (latest)
RefSeq assembly accession:
GCF_003574475.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QLIS02
Assembly method:
SOAPdenovo v. AUG-2019
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina HiSeq

IDs: 5427291 [UID] 15713188 [GenBank] 15822698 [RefSeq]

See Genome Information for Pseudofrancisella aestuarii

History (Show revision history)

Comment

Global statistics

Total sequence length1,799,274
Total ungapped length1,799,274
Number of contigs4
Contig N50575,809
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)4

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,799,27441,799,274575,80900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudofrancisella aestuariiPseudofrancisella aestuarii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001880225.1Francisella frigiditurristype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type93.1888.9185.94

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna