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ASM361147v1

Organism name:
Acinetobacter rongchengensis (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: WCHAc060115
BioSample:
SAMN09842375
BioProject:
PRJNA387062
Submitter:
West China Hospital, Sichuan University
Date:
2018/10/04
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003611475.1 (latest)
RefSeq assembly accession:
GCF_003611475.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
RAXT01
Assembly method:
Unicycler v. 0.4.6
Expected final version:
yes
Genome coverage:
200x
Sequencing technology:
Illumina HiSeq

IDs: 2005061 [UID] 7522898 [GenBank] 7550428 [RefSeq]

See Genome Information for Acinetobacter rongchengensis

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/28/2018 16:17:30
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,950
CDS (total)::3,880
Genes (coding)::3,776
CDS (coding)::3,776
Genes (RNA)::70
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::63
ncRNAs::4
Pseudo Genes (total)::104
Pseudo Genes (ambiguous residues)::0 of 104
Pseudo Genes (frameshifted)::42 of 104
Pseudo Genes (incomplete)::55 of 104
Pseudo Genes (internal stop)::34 of 104
Pseudo Genes (multiple problems)::25 of 104
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,102,130
Total ungapped length4,102,130
Number of contigs248
Contig N5068,539
Contig L5016
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)248

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,102,1302484,102,13068,53900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Acinetobacter rongchengensisAcinetobacter rongchengensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002233755.1Acinetobacter piscicolatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type89.3769.7079.95

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected