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GSC_YBM_2.0

  • Anomalous assembly.
Organism name:
Marmota flaviventris (yellow-bellied marmot)
Isolate:
SJ_83
Sex:
female
BioSample:
SAMN10078668
BioProject:
PRJNA491472
Submitter:
Canada's Genomic Enterprise
Date:
2019/05/24
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_003676075.2 (replaced)
RefSeq assembly accession:
GCF_003676075.2 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
QZWP02
Assembly method:
Supernova v. 2.1.1
Expected final version:
yes
Genome coverage:
45.0x
Sequencing technology:
Illumina HiSeq

IDs: 3216481 [UID] 10740828 [GenBank] 19638868 [RefSeq]

See Genome Information for Marmota flaviventris

History (Show revision history)

Comment

In June 2022 183 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length2,581,355,786
Total ungapped length2,528,753,487
Gaps between scaffolds0
Number of scaffolds33,624
Scaffold N5011,407,078
Scaffold L5062
Number of contigs68,595
Contig N50143,681
Contig L505,019
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)68,595

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,581,339,34833,6232,528,737,04911,407,07834,9710
MoleculeTotal
Length
Mitochondrion MT16,438