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ASM367621v3

Organism name:
Rhopalosiphum maidis (corn leaf aphid)
Isolate:
BTI-1
BioSample:
SAMN09625554
BioProject:
PRJNA480062
Submitter:
Cornell University
Date:
2019/02/06
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_003676215.3 (latest)
RefSeq assembly accession:
GCF_003676215.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QORX02
Assembly method:
canu v. 1.6
Expected final version:
yes
Genome coverage:
208.0x
Sequencing technology:
PacBio Sequel

IDs: 2229711 [UID] 8401378 [GenBank] 8519198 [RefSeq]

See Genome Information for Rhopalosiphum maidis

History (Show revision history)

Comment

Hi-C chromatin interaction maps were used to connect contigs assembled from PacBio reads

Global statistics

Total sequence length326,023,155
Total ungapped length325,976,255
Gaps between scaffolds0
Number of scaffolds220
Scaffold N5093,298,903
Scaffold L502
Number of contigs689
Contig N509,046,396
Contig L5010
Total number of chromosomes and plasmids4
Number of component sequences (WGS or clone)220

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003676245.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM014280.1=NC_040877.10
Chromosome 2CM014281.1=NC_040878.10
Chromosome 3CM014282.1=NC_040879.10
Chromosome 4CM014283.1=NC_040880.10
unplacedn/an/an/a216

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All326,023,155220325,976,25593,298,9034690
Chromosome 194,224,415194,216,01594,224,415840
Chromosome 293,298,903193,293,40393,298,903550
Chromosome 376,887,858176,859,35876,887,8582850
Chromosome 456,292,413156,287,91356,292,413450
unplaced5,319,5662165,319,56635,67400