Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

bTaeGut1.4.pri

Organism name:

Taeniopygia guttata (zebra finch)

Isolate:

Blue55

Sex:

female

BioSample:

SAMN02981239

BioProject:

PRJNA489098

Submitter:

Vertebrate Genomes Project

Date:

2021/05/04

Assembly type:

haploid (principal pseudohaplotype of diploid)

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_003957565.4 (latest)

RefSeq assembly accession:

GCF_003957565.2 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Different: chromosome MT.

Data displayed for RefSeq version

WGS Project:

RRCB02

Assembly method:

FALCON v. 5.1.1; FALCON unzip v. Nov2017(uc4); Purge_dups v. 1.0.1; Scaff10X v. 4.1.0; Bionano Solve BspQI/BssSI v. 3.4; Salsa2 v. 2.2.; Arrow polishing v. variantCaller 2.3.3; Merfin filtering v. 0.1; longranger align v. 2.2.2; freebayes polishing v. 1.3.1; gEVAL manual curation v. 2021-04-09; VGP pipeline v. 1.7

Expected final version:

Linked assembly:

GCA_003957525.2 (alternate pseudohaplotype of diploid)

IDs: 10005361 [UID] 26615478 [GenBank] 26711698 [RefSeq]

See Genome Information for Taeniopygia guttata

Pathogen Detection Resources

There are 15 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003957565.4	≠	GCF_003957565.2	bTaeGut1.4.pri	Chromosome	Latest GenBank, Latest RefSeq
GCA_003957565.3	n/a	n/a	bTaeGut1.pri.v2	Chromosome	Replaced GenBank
GCA_003957565.2	≠	GCF_003957565.1	bTaeGut1_v1.p	Chromosome	Replaced GenBank, RefSeq suppressed
GCA_003957565.1	n/a	n/a	bTaeGut1_v1.p	Chromosome	Replaced GenBank

Comment

This assembly, bTaeGut1.4.pri, is a revised version 4 assembly of the male zebra finch bTaeGut1, using the VGP pipeline v1.7 to remove more false gene duplications, increase genome assembly continguity, and identify additional chromosomes. It includes the W sex ... chromosome accession CM018260.2 from the assembly of female bTaeGut2 (GCA_008822105.2) to include the W and Z sex chromosomes in the same assembly.  more

Global statistics

Total sequence length	1,056,271,262
Total ungapped length	1,052,636,474
Gaps between scaffolds	0
Number of scaffolds	199
Scaffold N50	70,982,421
Scaffold L50	6
Number of contigs	551
Contig N50	8,964,551
Contig L50	32
Total number of chromosomes and plasmids	42
Number of component sequences (WGS or clone)	199

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM012081.2	=	NC_044211.2	0
Chromosome 1A	CM012082.2	=	NC_044212.2	0
Chromosome 2	CM012083.2	=	NC_044213.2	0
Chromosome 3	CM012084.2	=	NC_044214.2	0
Chromosome 4	CM012085.2	=	NC_044215.2	0
Chromosome 4A	CM012086.2	=	NC_044216.2	0
Chromosome 5	CM012087.2	=	NC_044217.2	0
Chromosome 6	CM012088.2	=	NC_044218.2	0
Chromosome 7	CM012089.2	=	NC_044219.2	0
Chromosome 8	CM012090.2	=	NC_044220.2	0
Chromosome 9	CM012091.2	=	NC_044221.2	0
Chromosome 10	CM012092.2	=	NC_044222.2	0
Chromosome 11	CM012093.2	=	NC_044223.2	0
Chromosome 12	CM012094.2	=	NC_044224.2	0
Chromosome 13	CM012095.2	=	NC_044225.2	0
Chromosome 14	CM012096.2	=	NC_044226.2	0
Chromosome 15	CM012097.2	=	NC_044227.2	0
Chromosome 16	CM012098.2	=	NC_044228.2	0
Chromosome 17	CM012099.2	=	NC_044229.2	0
Chromosome 18	CM012100.2	=	NC_044230.2	0
Chromosome 19	CM012101.2	=	NC_044231.2	0
Chromosome 20	CM012102.2	=	NC_044232.2	0
Chromosome 21	CM012103.2	=	NC_044233.2	0
Chromosome 22	CM012104.2	=	NC_044234.2	0
Chromosome 23	CM012105.2	=	NC_044235.2	0
Chromosome 24	CM012106.2	=	NC_044236.2	0
Chromosome 25	CM012107.2	=	NC_044237.2	0
Chromosome 26	CM012108.2	=	NC_044238.2	0
Chromosome 27	CM012110.2	=	NC_044239.2	0
Chromosome 28	CM012112.2	=	NC_044240.2	0
Chromosome Z	CM012113.2	=	NC_044241.2	0
Chromosome W	CM018260.2	=	NC_045028.1	0
Chromosome 29	CM012109.2	=	NC_044242.2	0
Chromosome 30	CM012111.2	=	NC_044243.2	0
Chromosome 31	CM025860.2	=	NC_054763.1	0
Chromosome 32	CM025861.2	=	NC_054764.1	0
Chromosome 33	CM025862.2	=	NC_054765.1	0
Chromosome 34	CM025863.2	=	NC_054766.1	0
Chromosome 35	CM025864.2	=	NC_054767.1	0
Chromosome 36	CM025865.2	=	NC_054768.1	0
Chromosome 37	CM030979.1	=	NC_054769.1	0
unplaced	n/a	n/a	n/a	157

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,056,254,409	198	1,052,619,621	70,982,421	352
Chromosome 1	114,020,016	1	113,951,423	114,020,016	19
Chromosome 1A	71,569,005	1	71,419,964	71,569,005	7
Chromosome 2	151,653,088	1	151,458,306	151,653,088	35
Chromosome 3	112,598,992	1	112,597,256	112,598,992	12
Chromosome 4	70,982,421	1	70,979,662	70,982,421	14
Chromosome 4A	19,491,698	1	19,491,171	19,491,698	3
Chromosome 5	61,663,524	1	61,545,516	61,663,524	12
Chromosome 6	35,592,820	1	35,257,592	35,592,820	10
Chromosome 7	37,979,234	1	37,978,434	37,979,234	5
Chromosome 8	31,251,066	1	31,206,235	31,251,066	11
Chromosome 9	25,529,500	1	25,510,950	25,529,500	5
Chromosome 10	20,543,327	1	20,421,173	20,543,327	5
Chromosome 11	21,108,237	1	21,036,756	21,108,237	5
Chromosome 12	20,384,687	1	20,344,641	20,384,687	2
Chromosome 13	18,052,104	1	18,019,296	18,052,104	10
Chromosome 14	16,340,488	1	16,340,365	16,340,488	1
Chromosome 15	13,771,869	1	13,770,623	13,771,869	4
Chromosome 16	1,095,113	1	1,094,490	1,095,113	2
Chromosome 17	11,257,394	1	11,231,046	11,257,394	5
Chromosome 18	11,152,170	1	11,127,651	11,152,170	4
Chromosome 19	8,335,140	1	8,334,594	8,335,140	4
Chromosome 20	14,749,488	1	14,725,636	14,749,488	7
Chromosome 21	7,924,511	1	7,783,248	7,924,511	8
Chromosome 22	4,608,043	1	4,607,284	4,608,043	4
Chromosome 23	6,804,446	1	6,804,223	6,804,446	2
Chromosome 24	7,620,594	1	7,619,649	7,620,594	5
Chromosome 25	2,880,192	1	2,880,069	2,880,192	1
Chromosome 26	6,804,938	1	6,804,515	6,804,938	3
Chromosome 27	5,378,928	1	5,318,712	5,378,928	3
Chromosome 28	5,866,305	1	5,733,436	5,866,305	7
Chromosome Z	75,396,176	1	74,535,143	75,396,176	31
Chromosome W	20,846,394	1	20,011,175	20,846,394	23
Chromosome 29	2,636,872	1	2,636,159	2,636,872	5
Chromosome 30	2,225,416	1	2,223,494	2,225,416	6
Chromosome 31	1,821,854	1	1,818,954	1,821,854	9
Chromosome 32	2,089,234	1	2,087,011	2,089,234	10
Chromosome 33	1,248,372	1	1,246,972	1,248,372	4
Chromosome 34	1,299,319	1	1,297,319	1,299,319	6
Chromosome 35	2,564,177	1	2,261,967	2,564,177	12
Chromosome 36	1,020,380	1	1,020,180	1,020,380	2
Chromosome 37	1,798,728	1	1,797,482	1,798,728	6
unplaced	6,298,149	157	6,289,849	44,206	23

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Send to:

Download Assembly

bTaeGut1.4.pri

See Genome Information for Taeniopygia guttata

Pathogen Detection Resources

There are 15 assemblies for this organism

History (Show revision history)

Comment

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

PubMed articles for this assembly

Recent activity

Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear