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ASM398488v2

Organism name:
Neopelma chrysocephalum (saffron-crested tyrant-manakin)
Sex:
female
BioSample:
SAMN08784363
BioProject:
PRJNA445439
Submitter:
Smithsonian Institution
Date:
2018/12/28
Assembly type:
diploid
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_003984885.2 (latest)
RefSeq assembly accession:
GCF_003984885.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: 42058 unplaced scaffolds
  • Data displayed for RefSeq version
WGS Project:
RDMT01
Assembly method:
Supernova2 v. February-2018
Expected final version:
yes
Genome coverage:
80.0x
Sequencing technology:
Illumina HiSeq

IDs: 2192731 [UID] 8176118 [GenBank] 8197108 [RefSeq]

See Genome Information for Neopelma chrysocephalum

History (Show revision history)

Comment

This is a diploid assembly of Neopelma chrysocephalum. The contigs of the primary assembly are RDMT01000001-RDMT01042063. The alternative haploid contigs (haplotigs) are RDMT01042064-RDMT01084121.

Global statistics*

Total sequence length1,142,796,179
Total ungapped length1,131,512,169
Gaps between scaffolds0
Number of scaffolds42,063
Scaffold N5010,517,223
Scaffold L5026
Number of contigs57,469
Contig N50237,029
Contig L501,315
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)42,063

*Note: Statistics shown for the primary assembly-unit. See the statistics report for additional statistics.

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,142,796,17942,0631,131,512,16910,517,22315,4060