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Source database (GenBank or RefSeq) File type

ASM401019v1

Organism name:

Chiloscyllium plagiosum (whitespotted bambooshark)

Isolate:

BGI_BamShark_2017

Sex:

female

BioSample:

SAMN09508879

BioProject:

PRJNA478295

Submitter:

BGI

Date:

2019/01/10

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_004010195.1 (latest)

RefSeq assembly accession:

GCF_004010195.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: 499073 unplaced scaffolds
Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

QPFF01

Assembly method:

platanus v. 1.2.4; 3ddna v. 170123

Expected final version:

yes

Genome coverage:

280.0x

Sequencing technology:

BGIseq-500

IDs: 10948741 [UID] 8216688 [GenBank] 28777758 [RefSeq]

See Genome Information for Chiloscyllium plagiosum

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_004010195.1	≠	GCF_004010195.1	ASM401019v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	3,556,477,427
Total ungapped length	3,352,382,142
Gaps between scaffolds	0
Number of scaffolds	101,977
Scaffold N50	73,167,256
Scaffold L50	17
Number of contigs	255,432
Contig N50	40,597
Contig L50	23,073
Total number of chromosomes and plasmids	52
Number of component sequences (WGS or clone)	101,977

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM012956.1	=	NC_057710.1	0
Chromosome 2	CM012957.1	=	NC_057711.1	0
Chromosome 3	CM012958.1	=	NC_057712.1	0
Chromosome 4	CM012959.1	=	NC_057713.1	0
Chromosome 5	CM012960.1	=	NC_057714.1	0
Chromosome 6	CM012961.1	=	NC_057715.1	0
Chromosome 7	CM012962.1	=	NC_057716.1	0
Chromosome 8	CM012963.1	=	NC_057717.1	0
Chromosome 9	CM012964.1	=	NC_057718.1	0
Chromosome 10	CM012965.1	=	NC_057719.1	0
Chromosome 11	CM012966.1	=	NC_057720.1	0
Chromosome 12	CM012967.1	=	NC_057721.1	0
Chromosome 13	CM012968.1	=	NC_057722.1	0
Chromosome 14	CM012969.1	=	NC_057723.1	0
Chromosome 15	CM012970.1	=	NC_057724.1	0
Chromosome 16	CM012971.1	=	NC_057725.1	0
Chromosome 17	CM012972.1	=	NC_057726.1	0
Chromosome 18	CM012973.1	=	NC_057727.1	0
Chromosome 19	CM012974.1	=	NC_057728.1	0
Chromosome 20	CM012975.1	=	NC_057729.1	0
Chromosome 21	CM012976.1	=	NC_057730.1	0
Chromosome 22	CM012977.1	=	NC_057731.1	0
Chromosome 23	CM012978.1	=	NC_057732.1	0
Chromosome 24	CM012979.1	=	NC_057733.1	0
Chromosome 25	CM012980.1	=	NC_057734.1	0
Chromosome 26	CM012981.1	=	NC_057735.1	0
Chromosome 27	CM012982.1	=	NC_057736.1	0
Chromosome 28	CM012983.1	=	NC_057737.1	0
Chromosome 29	CM012984.1	=	NC_057738.1	0
Chromosome 30	CM012985.1	=	NC_057739.1	0
Chromosome 31	CM012986.1	=	NC_057740.1	0
Chromosome 32	CM012987.1	=	NC_057741.1	0
Chromosome 33	CM012988.1	=	NC_057742.1	0
Chromosome 34	CM012989.1	=	NC_057743.1	0
Chromosome 35	CM012990.1	=	NC_057744.1	0
Chromosome 36	CM012991.1	=	NC_057745.1	0
Chromosome 37	CM012992.1	=	NC_057746.1	0
Chromosome 38	CM012993.1	=	NC_057747.1	0
Chromosome 39	CM012994.1	=	NC_057748.1	0
Chromosome 40	CM012995.1	=	NC_057749.1	0
Chromosome 41	CM012996.1	=	NC_057750.1	0
Chromosome 42	CM012997.1	=	NC_057751.1	0
Chromosome 43	CM012998.1	=	NC_057752.1	0
Chromosome 44	CM012999.1	=	NC_057753.1	0
Chromosome 45	CM013000.1	=	NC_057754.1	0
Chromosome 46	CM013001.1	=	NC_057755.1	0
Chromosome 47	CM013002.1	=	NC_057756.1	0
Chromosome 48	CM013003.1	=	NC_057757.1	0
Chromosome 49	CM013004.1	=	NC_057758.1	0
Chromosome 50	CM013005.1	=	NC_057759.1	0
Chromosome 51	CM013006.1	=	NC_057760.1	0
unplaced	n/a	n/a	n/a	101,925

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	3,556,460,701	101,976	3,352,365,416	73,167,256	153,455
Chromosome 1	156,605,281	1	150,205,416	156,605,281	5,707
Chromosome 2	146,811,608	1	141,405,409	146,811,608	4,913
Chromosome 3	138,146,672	1	132,603,795	138,146,672	5,004
Chromosome 4	138,123,871	1	132,993,768	138,123,871	4,673
Chromosome 5	124,146,585	1	119,028,795	124,146,585	4,626
Chromosome 6	121,738,290	1	117,295,464	121,738,290	4,163
Chromosome 7	118,100,771	1	113,191,443	118,100,771	4,673
Chromosome 8	107,641,581	1	100,560,250	107,641,581	7,248
Chromosome 9	105,880,166	1	101,726,926	105,880,166	3,707
Chromosome 10	95,765,476	1	92,153,049	95,765,476	3,379
Chromosome 11	94,731,289	1	90,790,533	94,731,289	3,486
Chromosome 12	88,215,405	1	84,509,752	88,215,405	3,259
Chromosome 13	84,431,700	1	81,137,596	84,431,700	2,955
Chromosome 14	82,264,352	1	79,341,197	82,264,352	2,779
Chromosome 15	81,258,972	1	78,218,683	81,258,972	2,795
Chromosome 16	76,207,864	1	73,189,713	76,207,864	2,841
Chromosome 17	73,167,256	1	70,283,324	73,167,256	2,550
Chromosome 18	72,140,027	1	69,353,414	72,140,027	2,533
Chromosome 19	69,975,007	1	67,402,001	69,975,007	2,337
Chromosome 20	64,470,864	1	62,014,962	64,470,864	2,274
Chromosome 21	60,475,494	1	58,148,960	60,475,494	2,107
Chromosome 22	59,434,192	1	57,305,004	59,434,192	1,959
Chromosome 23	58,390,107	1	56,148,746	58,390,107	1,969
Chromosome 24	56,061,091	1	53,755,634	56,061,091	2,002
Chromosome 25	54,599,976	1	52,427,743	54,599,976	1,939
Chromosome 26	53,348,395	1	51,100,566	53,348,395	2,000
Chromosome 27	51,668,882	1	49,700,161	51,668,882	1,817
Chromosome 28	51,250,956	1	49,095,997	51,250,956	1,926
Chromosome 29	49,129,825	1	47,289,238	49,129,825	1,698
Chromosome 30	47,580,804	1	45,605,676	47,580,804	1,742
Chromosome 31	45,411,694	1	43,698,233	45,411,694	1,627
Chromosome 32	45,129,243	1	43,465,391	45,129,243	1,572
Chromosome 33	43,997,911	1	42,377,204	43,997,911	1,499
Chromosome 34	43,401,492	1	41,787,718	43,401,492	1,536
Chromosome 35	42,304,429	1	40,729,052	42,304,429	1,399
Chromosome 36	38,655,811	1	37,187,086	38,655,811	1,314
Chromosome 37	35,007,441	1	32,804,223	35,007,441	1,836
Chromosome 38	30,225,729	1	29,158,783	30,225,729	998
Chromosome 39	27,915,349	1	26,389,411	27,915,349	1,387
Chromosome 40	26,991,761	1	25,797,570	26,991,761	1,059
Chromosome 41	20,367,195	1	19,340,682	20,367,195	945
Chromosome 42	19,796,287	1	19,030,402	19,796,287	709
Chromosome 43	16,392,401	1	15,482,399	16,392,401	806
Chromosome 44	15,332,846	1	14,644,360	15,332,846	694
Chromosome 45	13,660,452	1	12,669,492	13,660,452	798
Chromosome 46	12,823,346	1	12,230,840	12,823,346	582
Chromosome 47	10,712,325	1	9,996,581	10,712,325	587
Chromosome 48	9,987,384	1	9,256,828	9,987,384	684
Chromosome 49	9,983,820	1	9,388,750	9,983,820	650
Chromosome 50	8,079,144	1	7,629,273	8,079,144	410
Chromosome 51	4,637,688	1	4,208,918	4,637,688	347
unplaced	453,884,194	101,925	377,109,005	12,262	36,955

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ASM401019v1

See Genome Information for Chiloscyllium plagiosum

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear