Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

mPhyDis1.pri.v3

Organism name:

Phyllostomus discolor (pale spear-nosed bat)

Isolate:

MPI-MPIP mPhyDis1

Sex:

male

BioSample:

SAMN09948786

BioProject:

PRJNA489141

Submitter:

Vertebrate Genomes Project

Date:

2020/05/12

Assembly type:

haploid (principal pseudohaplotype of diploid)

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_004126475.3 (latest)

RefSeq assembly accession:

GCF_004126475.2 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: chromosome MT

Data displayed for RefSeq version

WGS Project:

RXPA02

Assembly method:

FALCON v. 5.1.1; FALCON-Unzip v. 1.0.2; scaff10X v. git 4.28.2018; Bionano Solve B v. spQI/BssSI 3.2.1; Salsa2 HiC v. 2.0; smrtanalysis Arrow polishing & gap filling v. 5.1.0.26412; longranger align v. 2.2.2; freebayes v. 1.2.0; purge_haplotigs v. bit 7.10.2018; gEVAL manual curation v. 2019-11-29

Expected final version:

Genome coverage:

65.8x

Sequencing technology:

PacBio Sequel; 10X Genomics linked reads; Bioanano Genomics 2 enzyme; Arima Genomics HiC

Linked assembly:

GCA_004115245.2 (alternate pseudohaplotype of diploid)

IDs: 7099551 [UID] 19523818 [GenBank] 21807508 [RefSeq]

See Genome Information for Phyllostomus discolor

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_004126475.3	≠	GCF_004126475.2	mPhyDis1.pri.v3	Chromosome	Latest GenBank, Latest RefSeq
GCA_004126475.2	≠	GCF_004126475.1	mPhyDis1_v1.p	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_004126475.1	n/a	n/a	mPhyDis1_v1.p	Chromosome	Replaced GenBank

Comment

This assembly represents the principal haplotype of the diploid genome Phyllostomus discolor and includes the chromosomes. The alternate haplotype sequences are in WGS project RXPB00000000

Global statistics

Total sequence length	2,108,832,841
Total ungapped length	2,093,744,005
Gaps between scaffolds	0
Number of scaffolds	77
Scaffold N50	171,742,863
Scaffold L50	6
Number of contigs	953
Contig N50	6,892,556
Contig L50	94
Total number of chromosomes and plasmids	17
Number of component sequences (WGS or clone)	77

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM014254.2	=	NC_040903.2	0
Chromosome 2	CM014255.2	=	NC_040904.2	0
Chromosome 3	CM014256.2	=	NC_040905.2	0
Chromosome 4	CM014257.2	=	NC_040906.2	0
Chromosome 5	CM014258.2	=	NC_040907.2	0
Chromosome 6	CM014259.2	=	NC_040908.2	0
Chromosome 7	CM014260.2	=	NC_040909.2	0
Chromosome 8	CM014261.2	=	NC_040910.2	0
Chromosome 9	CM014262.2	=	NC_040911.2	0
Chromosome 10	CM014263.2	=	NC_040912.2	0
Chromosome 11	CM014264.2	=	NC_040913.2	0
Chromosome 12	CM014265.2	=	NC_040914.2	0
Chromosome 13	CM014266.2	=	NC_040915.2	0
Chromosome 14	CM014267.2	=	NC_040916.2	0
Chromosome 15	CM014268.2	=	NC_040917.2	7
Chromosome X	CM023025.1	=	NC_050198.1	0
Chromosome Y	CM023026.1	=	NC_050199.1	0
unplaced	n/a	n/a	n/a	53

Molecule	Sequence Role	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	Assembled molecule	2,108,832,841	77	2,093,744,005	171,742,863	876	0
Chromosome 1	Assembled molecule	218,430,143	1	217,553,978	218,430,143	70	0
Chromosome 2	Assembled molecule	217,365,085	1	216,041,292	217,365,085	64	0
Chromosome 3	Assembled molecule	214,898,898	1	213,579,086	214,898,898	71	0
Chromosome 4	Assembled molecule	209,856,503	1	209,183,158	209,856,503	55	0
Chromosome 5	Assembled molecule	175,148,221	1	174,510,705	175,148,221	55	0
Chromosome 6	Assembled molecule	171,742,863	1	169,861,949	171,742,863	64	0
Chromosome 7	Assembled molecule	139,247,929	1	139,031,576	139,247,929	33	0
Chromosome 8	Assembled molecule	114,856,535	1	114,304,327	114,856,535	42	0
Chromosome 9	Assembled molecule	105,687,968	1	105,410,204	105,687,968	29	0
Chromosome 10	Assembled molecule	95,633,574	1	95,335,265	95,633,574	35	0
Chromosome 11	Assembled molecule	95,224,836	1	94,953,622	95,224,836	32	0
Chromosome 12	Assembled molecule	77,959,510	1	75,879,187	77,959,510	57	0
Chromosome 13	Assembled molecule	77,039,987	1	76,415,985	77,039,987	26	0
Chromosome 14	Assembled molecule	52,274,924	1	51,871,116	52,274,924	26	0
Chromosome 15	AllAssembled moleculeUnlocalized scaffolds	29,050,15426,886,7752,163,379	817	28,984,21726,826,7312,157,486	26,886,77526,886,775407,212	735815	000
Chromosome X	Assembled molecule	107,342,191	1	104,470,332	107,342,191	120	0
Chromosome Y	Assembled molecule	4,591,497	1	3,878,978	4,591,497	18	0
unplaced	Assembled molecule	2,482,023	53	2,479,028	47,613	6	0

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Send to:

Download Assembly

mPhyDis1.pri.v3

See Genome Information for Phyllostomus discolor

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

PubMed articles for this assembly

Recent activity

Global assembly definition

Assembly statistics