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Source database (GenBank or RefSeq) File type

ASM419377v2

Organism name:

Glycine soja (wild soybean)

Infraspecific name:

Cultivar: W05

BioSample:

SAMN09862384

BioProject:

PRJNA486704

Submitter:

The Chinese University of Hong Kong

Date:

2019/02/21

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_004193775.2 (latest)

RefSeq assembly accession:

GCF_004193775.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosomes MT and Pltd

Data displayed for RefSeq version

WGS Project:

QZWG01

Assembly method:

MECAT v. Aug-2017

Expected final version:

yes

Genome coverage:

77.0x

Sequencing technology:

PacBio RSII; Illumina HiSeq

IDs: 2315131 [UID] 8619628 [GenBank] 8715888 [RefSeq]

See Genome Information for Glycine soja

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_004193775.2	≠	GCF_004193775.1	ASM419377v2	Chromosome	Latest GenBank, Latest RefSeq
GCA_004193775.1	n/a	n/a	ASM419377v1	Scaffold	Replaced GenBank

Comment

Global statistics

Total sequence length	1,013,766,566
Total ungapped length	989,192,843
Gaps between scaffolds	0
Number of scaffolds	1,120
Scaffold N50	50,696,784
Scaffold L50	10
Number of contigs	1,872
Contig N50	3,325,257
Contig L50	59
Total number of chromosomes and plasmids	22
Number of component sequences (WGS or clone)	1,120

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM014357.1	=	NC_041002.1	0
Chromosome 2	CM014358.1	=	NC_041003.1	0
Chromosome 3	CM014359.1	=	NC_041004.1	0
Chromosome 4	CM014360.1	=	NC_041005.1	0
Chromosome 5	CM014361.1	=	NC_041006.1	0
Chromosome 6	CM014362.1	=	NC_041007.1	0
Chromosome 7	CM014363.1	=	NC_041008.1	0
Chromosome 8	CM014364.1	=	NC_041009.1	0
Chromosome 9	CM014365.1	=	NC_041010.1	0
Chromosome 10	CM014366.1	=	NC_041011.1	0
Chromosome 11	CM014367.1	=	NC_041012.1	0
Chromosome 12	CM014368.1	=	NC_041013.1	0
Chromosome 13	CM014369.1	=	NC_041014.1	0
Chromosome 14	CM014370.1	=	NC_041015.1	0
Chromosome 15	CM014371.1	=	NC_041016.1	0
Chromosome 16	CM014372.1	=	NC_041017.1	0
Chromosome 17	CM014373.1	=	NC_041018.1	0
Chromosome 18	CM014374.1	=	NC_041019.1	0
Chromosome 19	CM014375.1	=	NC_041020.1	0
Chromosome 20	CM014376.1	=	NC_041021.1	0
unplaced	n/a	n/a	n/a	1,098

Molecule name	GenBank ID		RefSeq ID
Mitochondrion MT	MF955859.1	=	NC_039768.1
Chloroplast Pltd	KF611800.1	=	NC_022868.1

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,013,211,804	1,118	988,638,081	50,696,784	752
Chromosome 1	57,321,005	1	56,247,059	57,321,005	46
Chromosome 2	50,741,956	1	49,942,703	50,741,956	32
Chromosome 3	47,720,463	1	47,269,785	47,720,463	44
Chromosome 4	52,043,508	1	51,396,061	52,043,508	43
Chromosome 5	44,189,043	1	42,058,476	44,189,043	42
Chromosome 6	48,655,586	1	47,856,117	48,655,586	36
Chromosome 7	46,835,257	1	44,030,694	46,835,257	32
Chromosome 8	48,125,468	1	47,401,887	48,125,468	26
Chromosome 9	48,055,861	1	47,432,122	48,055,861	28
Chromosome 10	53,188,214	1	52,175,870	53,188,214	44
Chromosome 11	53,538,361	1	53,090,602	53,538,361	25
Chromosome 12	44,550,447	1	41,537,383	44,550,447	44
Chromosome 13	31,527,746	1	30,954,037	31,527,746	24
Chromosome 14	51,561,976	1	49,487,508	51,561,976	42
Chromosome 15	51,897,278	1	50,063,123	51,897,278	44
Chromosome 16	38,418,214	1	37,916,795	38,418,214	24
Chromosome 17	42,003,996	1	41,467,726	42,003,996	37
Chromosome 18	57,740,077	1	55,845,773	57,740,077	50
Chromosome 19	50,696,784	1	49,672,389	50,696,784	45
Chromosome 20	50,983,946	1	49,563,413	50,983,946	42
unplaced	43,416,618	1,098	43,228,558	50,117	2

Molecule	Total Length
All	554,762
Mitochondrion MT	402,545
Chloroplast Pltd	152,217

Assembly

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ASM419377v2

See Genome Information for Glycine soja

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear