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ASM429362v1

Organism name:
Thiomicrorhabdus indica (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 13-15A
BioSample:
SAMN10233482
BioProject:
PRJNA495865
Submitter:
Third Institute of Oceanography,State Oceanic Administration,People's Republic of China
Date:
2019/02/22
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_004293625.1 (latest)
RefSeq assembly accession:
GCF_004293625.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SOAPdenovo v. v1.05
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina HiSeq

IDs: 2316671 [UID] 8639068 [GenBank] 8640788 [RefSeq]

See Genome Information for Thiomicrorhabdus indica

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/24/2023 02:50:51
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,490
CDSs (total)::2,427
Genes (coding)::2,419
CDSs (with protein)::2,419
Genes (RNA)::63
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::51
ncRNAs::3
Pseudo Genes (total)::8
CDSs (without protein)::8
Pseudo Genes (ambiguous residues)::0 of 8
Pseudo Genes (frameshifted)::2 of 8
Pseudo Genes (incomplete)::5 of 8
Pseudo Genes (internal stop)::2 of 8
Pseudo Genes (multiple problems)::1 of 8
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,829,883
Total ungapped length2,829,883
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_004293635.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP033040.1=NZ_CP033040.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,829,883

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Thiomicrorhabdus indicaThiomicrorhabdus indica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_017571465.1Thiomicrorhabdus marinatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.895.045.04

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected