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PodMur_1.0

Organism name:
Podarcis muralis (Common wall lizard)
Infraspecific name:
Ecotype: yellow
Sex:
male
BioSample:
SAMN10820182
BioProject:
PRJNA515813
Submitter:
CIBIO-InBIO
Date:
2019/03/07
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_004329235.1 (latest)
RefSeq assembly accession:
GCF_004329235.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
SIRZ01
Assembly method:
FALCON v. 0.4.0; Pilon v. JAN-2018; HiRise v. JAN-2018
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
PacBio; HiSeq; Chicago; HiC

IDs: 2337881 [UID] 8715478 [GenBank] 8973908 [RefSeq]

See Genome Information for Podarcis muralis

Pathogen Detection Resources

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length1,511,020,169
Total ungapped length1,508,102,667
Gaps between scaffolds0
Number of scaffolds2,161
Scaffold N5092,398,148
Scaffold L507
Number of contigs6,246
Contig N50714,612
Contig L50622
Total number of chromosomes and plasmids20
Number of component sequences (WGS or clone)2,161

Supplemental Content

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Assembly Information

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PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_004329435.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM014743.1=NC_041312.10
Chromosome 2CM014744.1=NC_041313.10
Chromosome 3CM014745.1=NC_041314.10
Chromosome 4CM014746.1=NC_041315.10
Chromosome 5CM014747.1=NC_041316.10
Chromosome 6CM014748.1=NC_041317.10
Chromosome 7CM014749.1=NC_041318.10
Chromosome 8CM014750.1=NC_041319.10
Chromosome 9CM014751.1=NC_041320.10
Chromosome 10CM014752.1=NC_041321.10
Chromosome 11CM014753.1=NC_041322.10
Chromosome 12CM014754.1=NC_041323.10
Chromosome 13CM014755.1=NC_041324.10
Chromosome 14CM014756.1=NC_041325.10
Chromosome 15CM014757.1=NC_041326.10
Chromosome 16CM014758.1=NC_041327.10
Chromosome 17CM014759.1=NC_041328.10
Chromosome 18CM014760.1=NC_041329.10
Chromosome ZCM014761.1=NC_041330.10
unplacedn/an/an/a2,141

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All1,511,002,8582,1601,508,085,35692,398,1484,0850
Chromosome 1140,209,9211139,957,717140,209,9213630
Chromosome 2128,038,1631127,760,651128,038,1633850
Chromosome 3124,954,0591124,728,183124,954,0593300
Chromosome 4107,526,6751107,297,507107,526,6753060
Chromosome 5100,393,2511100,233,139100,393,2512330
Chromosome 699,678,440199,505,97399,678,4402370
Chromosome 792,398,148192,201,12392,398,1482670
Chromosome 890,342,841190,165,04790,342,8412440
Chromosome 979,135,106178,957,78479,135,1062410
Chromosome 1076,280,819176,144,69676,280,8192070
Chromosome 1165,231,656165,107,72465,231,6561720
Chromosome 1260,949,594160,818,44260,949,5941900
Chromosome 1356,546,671156,412,48856,546,6711970
Chromosome 1454,988,359154,886,61054,988,3591320
Chromosome 1546,441,056146,357,64946,441,0561090
Chromosome 1643,659,005143,557,62443,659,0051530
Chromosome 1742,925,489142,839,25142,925,4891170
Chromosome 1814,237,138114,189,05114,237,138620
Chromosome Z50,871,175150,797,30750,871,1751040
unplaced36,195,2922,14136,167,39019,937360
MoleculeTotal
Length
Mitochondrion MT17,311