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ASM434606v1

Organism name:
Rahnella sp. JUb53 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: JUb53
BioSample:
SAMN10361114
BioProject:
PRJNA499493
Submitter:
DOE Joint Genome Institute
Date:
2019/03/11
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_004346065.1 (latest)
RefSeq assembly accession:
GCF_004346065.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
SLYT01
Assembly method:
SPAdes v. 3.11.0
Expected final version:
no
Genome coverage:
274.0x
Sequencing technology:
Illumina

IDs: 2344041 [UID] 8737148 [GenBank] 8756448 [RefSeq]

See Genome Information for Rahnella sp. JUb53

History (Show revision history)

Comment

Global statistics

Total sequence length5,463,546
Total ungapped length5,463,449
Gaps between scaffolds0
Number of scaffolds34
Scaffold N50573,803
Scaffold L504
Number of contigs35
Contig N50573,803
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)34

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,463,546345,463,449573,80310

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Rahnella sp. JUb53Rahnella sp. JUb53

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003610915.1Rahnella variigenatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.5689.9989.40

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna