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Source database (GenBank or RefSeq) File type

EGFV_Vit.rip_1.0

Organism name:

Vitis riparia (riverbank grape)

Infraspecific name:

Cultivar: Riparia Gloire de Montpellier

Isolate:

1030

BioSample:

SAMN10662253

BioProject:

PRJNA512170

Submitter:

Bordeaux University

Date:

2019/04/16

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_004353265.1 (latest)

RefSeq assembly accession:

GCF_004353265.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome Pltd

Data displayed for RefSeq version

WGS Project:

SJAQ01

Assembly method:

FALCON-Unzip v. v0.3.0; Supernova v. v2.1.0

Expected final version:

yes

Genome coverage:

335.0x

Sequencing technology:

Illumina HiSeq; PacBio RSII; 10X Chromium Genomics

IDs: 2579131 [UID] 9335478 [GenBank] 19790268 [RefSeq]

See Genome Information for Vitis riparia

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_004353265.1	≠	GCF_004353265.1	EGFV_Vit.rip_1.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	500,266,779
Total ungapped length	494,200,111
Gaps between scaffolds	0
Number of scaffolds	175
Scaffold N50	23,918,791
Scaffold L50	9
Number of contigs	1,161
Contig N50	738,826
Contig L50	197
Total number of chromosomes and plasmids	20
Number of component sequences (WGS or clone)	175

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM014904.1	=	NC_048431.1	0
Chromosome 2	CM014905.1	=	NC_048432.1	0
Chromosome 3	CM014906.1	=	NC_048433.1	0
Chromosome 4	CM014907.1	=	NC_048434.1	0
Chromosome 5	CM014908.1	=	NC_048435.1	0
Chromosome 6	CM014909.1	=	NC_048436.1	0
Chromosome 7	CM014910.1	=	NC_048437.1	0
Chromosome 8	CM014911.1	=	NC_048438.1	0
Chromosome 9	CM014912.1	=	NC_048439.1	0
Chromosome 10	CM014913.1	=	NC_048440.1	0
Chromosome 11	CM014914.1	=	NC_048441.1	0
Chromosome 12	CM014915.1	=	NC_048442.1	0
Chromosome 13	CM014916.1	=	NC_048443.1	0
Chromosome 14	CM014917.1	=	NC_048444.1	0
Chromosome 15	CM014918.1	=	NC_048445.1	0
Chromosome 16	CM014919.1	=	NC_048446.1	0
Chromosome 17	CM014920.1	=	NC_048447.1	0
Chromosome 18	CM014921.1	=	NC_048448.1	0
Chromosome 19	CM014922.1	=	NC_048449.1	0
unplaced	n/a	n/a	n/a	155

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	500,105,807	174	494,039,139	23,918,791	986
Chromosome 1	24,158,808	1	24,065,718	24,158,808	33
Chromosome 2	19,595,530	1	19,422,262	19,595,530	38
Chromosome 3	20,122,253	1	19,774,647	20,122,253	44
Chromosome 4	24,725,119	1	24,612,814	24,725,119	33
Chromosome 5	24,447,104	1	24,161,943	24,447,104	46
Chromosome 6	22,961,179	1	22,789,541	22,961,179	31
Chromosome 7	30,406,434	1	30,077,398	30,406,434	55
Chromosome 8	22,709,578	1	22,401,833	22,709,578	38
Chromosome 9	23,720,873	1	23,426,732	23,720,873	57
Chromosome 10	23,623,711	1	23,266,781	23,623,711	50
Chromosome 11	19,822,642	1	19,494,917	19,822,642	44
Chromosome 12	23,486,479	1	23,120,226	23,486,479	65
Chromosome 13	29,500,977	1	29,255,581	29,500,977	73
Chromosome 14	29,866,197	1	29,246,288	29,866,197	67
Chromosome 15	21,840,695	1	21,646,427	21,840,695	50
Chromosome 16	23,918,791	1	23,586,450	23,918,791	57
Chromosome 17	20,875,004	1	20,727,547	20,875,004	27
Chromosome 18	39,737,400	1	39,326,807	39,737,400	84
Chromosome 19	25,684,525	1	25,540,307	25,684,525	56
unplaced	28,902,508	155	28,094,920	180,656	38

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EGFV_Vit.rip_1.0

See Genome Information for Vitis riparia

Pathogen Detection Resources

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear