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UK_Dinn_1.0

Organism name:
Drosophila innubila (flies)
Isolate:
TH190305
Sex:
female
BioSample:
SAMN11037163
BioProject:
PRJNA524688
Submitter:
University of Kansas
Date:
2019/03/19
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_004354385.1 (replaced)
RefSeq assembly accession:
GCF_004354385.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
SKCT01
Assembly method:
Canu v. 1.6
Expected final version:
yes
Genome coverage:
20.0x
Sequencing technology:
Oxford Nanopore MiniION

IDs: 2348921 [UID] 8760038 [GenBank] 19437008 [RefSeq]

See Genome Information for Drosophila innubila

History (Show revision history)

Comment

Global statistics

Total sequence length167,978,031
Total ungapped length167,963,911
Gaps between scaffolds0
Number of scaffolds363
Scaffold N5029,570,363
Scaffold L503
Number of contigs561
Contig N503,071,820
Contig L5017
Total number of chromosomes and plasmids7
Number of component sequences (WGS or clone)363

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_004354425.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 4CM015045.1=NC_047625.10
Chromosome 2Ln/an/an/a2
Chromosome 2Rn/an/an/a2
Chromosome 3Ln/an/an/a3
Chromosome 3Rn/an/an/a2
Chromosome XCM015046.1=NC_047626.10
Chromosome Yn/an/an/a28
unplacedn/an/an/a324

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule167,978,031363167,963,91129,570,3631980
Chromosome 4Assembled molecule2,027,02912,025,8092,027,029140
Chromosome 2LAllAssembled moleculeUnlocalized scaffolds37,607,340037,607,34020237,599,276037,599,27629,570,363029,570,36398098000
Chromosome 2RAllAssembled moleculeUnlocalized scaffolds25,699,767025,699,76720225,699,607025,699,60725,683,277025,683,277707000
Chromosome 3LAllAssembled moleculeUnlocalized scaffolds28,205,724028,205,72430328,204,206028,204,20627,707,067027,707,06725025000
Chromosome 3RAllAssembled moleculeUnlocalized scaffolds32,764,913032,764,91320232,763,943032,763,94332,746,461032,746,46116016000
Chromosome XAssembled molecule40,478,902140,476,73440,478,902360
Chromosome YAllAssembled moleculeUnlocalized scaffolds30,897030,8972802830,897030,8971,11801,118000000
unplacedAssembled molecule1,163,4593241,163,43920,19520