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Source database (GenBank or RefSeq) File type

PFLA_1.0

Organism name:

Perca flavescens (yellow perch)

Isolate:

YP-PL-M2

Sex:

male

BioSample:

SAMN10722690

BioProject:

PRJNA514308

Submitter:

INRA (Fish Physiology and Genomics laboratory)

Date:

2019/03/19

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_004354835.1 (latest)

RefSeq assembly accession:

GCF_004354835.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

SCKG01

Assembly method:

SmartDeNovo v. MAY-2017; 3D-DNA v. 180114

Expected final version:

yes

Genome coverage:

137.7x

Sequencing technology:

Oxford Nanopore; Illumina HiSeq

IDs: 2348861 [UID] 8759988 [GenBank] 8974128 [RefSeq]

See Genome Information for Perca flavescens

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_004354835.1	≠	GCF_004354835.1	PFLA_1.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

Annotation predicted by Maker

Global statistics

Total sequence length	877,456,336
Total ungapped length	877,041,836
Gaps between scaffolds	0
Number of scaffolds	268
Scaffold N50	37,412,490
Scaffold L50	11
Number of contigs	1,097
Contig N50	4,268,950
Contig L50	61
Total number of chromosomes and plasmids	25
Number of component sequences (WGS or clone)	268

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM014935.1	=	NC_041331.1	0
Chromosome 2	CM014936.1	=	NC_041332.1	0
Chromosome 3	CM014937.1	=	NC_041333.1	0
Chromosome 4	CM014938.1	=	NC_041334.1	0
Chromosome 5	CM014939.1	=	NC_041335.1	0
Chromosome 6	CM014940.1	=	NC_041336.1	0
Chromosome 7	CM014941.1	=	NC_041337.1	0
Chromosome 8	CM014942.1	=	NC_041338.1	0
Chromosome 9	CM014943.1	=	NC_041339.1	0
Chromosome 10	CM014944.1	=	NC_041340.1	0
Chromosome 11	CM014945.1	=	NC_041341.1	0
Chromosome 12	CM014946.1	=	NC_041342.1	0
Chromosome 13	CM014947.1	=	NC_041343.1	0
Chromosome 14	CM014948.1	=	NC_041344.1	0
Chromosome 15	CM014949.1	=	NC_041345.1	0
Chromosome 16	CM014950.1	=	NC_041346.1	0
Chromosome 17	CM014951.1	=	NC_041347.1	0
Chromosome 18	CM014952.1	=	NC_041348.1	0
Chromosome 19	CM014953.1	=	NC_041349.1	0
Chromosome 20	CM014954.1	=	NC_041350.1	0
Chromosome 21	CM014955.1	=	NC_041351.1	0
Chromosome 22	CM014956.1	=	NC_041352.1	0
Chromosome 23	CM014957.1	=	NC_041353.1	0
Chromosome 24	CM014958.1	=	NC_041354.1	0
unplaced	n/a	n/a	n/a	243

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	877,439,799	267	877,025,299	37,412,490	829
Chromosome 1	44,580,961	1	44,570,961	44,580,961	20
Chromosome 2	44,434,696	1	44,410,196	44,434,696	49
Chromosome 3	43,890,131	1	43,866,131	43,890,131	48
Chromosome 4	41,654,354	1	41,642,354	41,654,354	24
Chromosome 5	41,389,290	1	41,374,290	41,389,290	30
Chromosome 6	39,981,797	1	39,958,797	39,981,797	46
Chromosome 7	39,913,615	1	39,894,615	39,913,615	38
Chromosome 8	39,310,041	1	39,301,041	39,310,041	18
Chromosome 9	38,629,564	1	38,617,564	38,629,564	24
Chromosome 10	37,816,349	1	37,804,849	37,816,349	23
Chromosome 11	37,412,490	1	37,394,990	37,412,490	35
Chromosome 12	36,312,542	1	36,301,042	36,312,542	23
Chromosome 13	35,912,575	1	35,901,575	35,912,575	22
Chromosome 14	35,335,407	1	35,318,407	35,335,407	34
Chromosome 15	35,039,149	1	35,017,649	35,039,149	43
Chromosome 16	34,782,808	1	34,766,808	34,782,808	32
Chromosome 17	34,754,642	1	34,746,642	34,754,642	16
Chromosome 18	33,289,289	1	33,274,289	33,289,289	30
Chromosome 19	33,212,509	1	33,182,009	33,212,509	61
Chromosome 20	32,987,892	1	32,972,392	32,987,892	31
Chromosome 21	31,135,000	1	31,120,000	31,135,000	30
Chromosome 22	28,764,756	1	28,753,756	28,764,756	22
Chromosome 23	27,162,522	1	27,144,022	27,162,522	37
Chromosome 24	19,046,854	1	19,035,354	19,046,854	23
unplaced	10,690,566	243	10,655,566	167,203	70

Assembly

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PFLA_1.0

See Genome Information for Perca flavescens

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear