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SspV2

Organism name:
Salvia splendens (eudicots)
Isolate:
huo1
BioSample:
SAMN08162997
BioProject:
PRJNA422035
Submitter:
Beijing Forestry University
Date:
2021/05/20
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_004379255.2 (latest)
RefSeq assembly accession:
GCF_004379255.1 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Different: chromosome Pltd.
  • Data displayed for RefSeq version
WGS Project:
PNBA02
Assembly method:
3d-dna v. 180922
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
PacBio; Illumina HiSeq

IDs: 10079611 [UID] 26798168 [GenBank] 27395908 [RefSeq]

See Genome Information for Salvia splendens

History (Show revision history)

Comment

Global statistics

Total sequence length806,486,317
Total ungapped length806,451,882
Gaps between scaffolds0
Number of scaffolds1,178
Scaffold N5035,138,742
Scaffold L5010
Number of contigs1,626
Contig N504,037,669
Contig L5066
Total number of chromosomes and plasmids23
Number of component sequences (WGS or clone)1,178

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_004379375.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM031472.1=NC_056032.10
Chromosome 2CM031473.1=NC_056033.10
Chromosome 3CM031474.1=NC_056034.10
Chromosome 4CM031475.1=NC_056035.10
Chromosome 5CM031476.1=NC_056036.10
Chromosome 6CM031477.1=NC_056037.10
Chromosome 7CM031478.1=NC_056038.10
Chromosome 8CM031479.1=NC_056039.10
Chromosome 9CM031480.1=NC_056040.10
Chromosome 10CM031481.1=NC_056041.10
Chromosome 11CM031482.1=NC_056042.10
Chromosome 12CM031483.1=NC_056043.10
Chromosome 13CM031484.1=NC_056044.10
Chromosome 14CM031485.1=NC_056045.10
Chromosome 15CM031486.1=NC_056046.10
Chromosome 16CM031487.1=NC_056047.10
Chromosome 17CM031488.1=NC_056048.10
Chromosome 18CM031489.1=NC_056049.10
Chromosome 19CM031490.1=NC_056050.10
Chromosome 20CM031491.1=NC_056051.10
Chromosome 21CM031492.1=NC_056052.10
Chromosome 22CM031493.1=NC_056053.10
unplacedn/an/an/a1,155

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All806,335,7131,177806,301,27835,138,7424480
Chromosome 147,130,199147,129,01847,130,199140
Chromosome 243,663,975143,662,74443,663,975150
Chromosome 345,750,320145,748,99545,750,320180
Chromosome 441,582,922141,581,09041,582,922180
Chromosome 543,775,046143,773,97443,775,046130
Chromosome 638,537,683138,536,30438,537,683180
Chromosome 737,237,137137,235,02237,237,137290
Chromosome 834,700,264134,699,45534,700,264100
Chromosome 936,474,241136,473,22636,474,241120
Chromosome 1030,561,544130,560,79830,561,544100
Chromosome 1135,206,759135,201,67035,206,759710
Chromosome 1233,758,164133,757,05933,758,164130
Chromosome 1335,138,742135,137,08635,138,742200
Chromosome 1431,325,185131,323,62031,325,185210
Chromosome 1534,957,497134,955,61934,957,497250
Chromosome 1634,015,037134,012,97134,015,037270
Chromosome 1728,571,943128,570,74028,571,943180
Chromosome 1825,457,334125,456,56125,457,33490
Chromosome 1928,282,137128,280,67328,282,137180
Chromosome 2027,682,662127,679,95127,682,662390
Chromosome 2127,667,306127,666,20927,667,306160
Chromosome 2225,615,879125,614,75625,615,879140
unplaced39,243,7371,15539,243,73737,65600
MoleculeTotal
Length
Chloroplast Pltd150,604