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ASM438214v1

Organism name:
Drosophila mauritiana (flies)
Infraspecific name:
Strain: mau12
Sex:
male
BioSample:
SAMN06827991
BioProject:
PRJNA383250
Submitter:
University of California, Irvine
Date:
2019/04/16
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_004382145.1 (latest)
RefSeq assembly accession:
GCF_004382145.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Different: chromosome MT.
  • Data displayed for RefSeq version
WGS Project:
NIGA01
Assembly method:
WGS v. 8.3rc1; DBG2OLC v. 1; Quickmerge v. 0.1
Expected final version:
yes
Genome coverage:
165.0x
Sequencing technology:
PacBio

IDs: 2579091 [UID] 9335368 [GenBank] 18513878 [RefSeq]

See Genome Information for Drosophila mauritiana

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length152,313,266
Total ungapped length152,310,466
Gaps between scaffolds0
Number of scaffolds353
Scaffold N5024,228,064
Scaffold L503
Number of contigs381
Contig N5022,120,385
Contig L504
Total number of chromosomes and plasmids7
Number of component sequences (WGS or clone)353

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_004382275.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 2LCM015614.1=NC_046667.10
Chromosome 2RCM015615.1=NC_046668.10
Chromosome 3LCM015616.1=NC_046669.10
Chromosome 3RCM015617.1=NC_046670.10
Chromosome 4CM015612.1=NC_046671.10
Chromosome XCM015613.1=NC_046672.10
unplacedn/an/an/a346

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All152,298,302352152,295,50224,228,064280
Chromosome 2L24,228,064124,227,66424,228,06440
Chromosome 2R23,535,060123,534,56023,535,06050
Chromosome 3L26,143,691126,143,29126,143,69140
Chromosome 3R28,872,862128,872,16228,872,86270
Chromosome 41,160,60011,160,6001,160,60000
Chromosome X23,222,241123,221,44123,222,24180
unplaced25,135,78434625,135,784102,92100
MoleculeTotal
Length
Mitochondrion MT14,964