Jm3101_v1.0

Organism name:: Juglans microcarpa x Juglans regia (eudicots)
Isolate:: MS1-56
BioSample:: SAMN09474938
BioProject:: PRJNA529253
Submitter:: University of California, Davis
Date:: 2019/04/16
Assembly type:: haploid (principal pseudohaplotype of diploid)
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_004785595.1 (latest)
RefSeq assembly accession:: GCF_004785595.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: QKZX01
Assembly method:: FALCON v. 0.4.2
Expected final version:: no
Genome coverage:: 47x
Sequencing technology:: PacBio

IDs: 2579021 [UID] 9335228 [GenBank] 26539378 [RefSeq]

See Genome Information for Juglans microcarpa x Juglans regia

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_004785595.1	=	GCF_004785595.1	Jm3101_v1.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

This assembly represents the maternal (Juglans microcarpa isolate 31.01) principal pseudohaplotype of the diploid genome Juglans microcarpa x Juglans regia isolate MS1-56. The paternal (alternate) pseudohaplotype sequences are in WGS project QKZY00000000.

Global statistics

Total sequence length	527,895,757
Total ungapped length	523,585,557
Gaps between scaffolds	0
Number of scaffolds	154
Scaffold N50	35,629,462
Scaffold L50	7
Number of contigs	208
Contig N50	11,553,270
Contig L50	17
Total number of chromosomes and plasmids	16
Number of component sequences (WGS or clone)	154

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1D	CM015633.1	=	NC_054594.1	0
Chromosome 1S	CM015634.1	=	NC_054595.1	0
Chromosome 2D	CM015635.1	=	NC_054596.1	0
Chromosome 2S	CM015636.1	=	NC_054597.1	0
Chromosome 3D	CM015637.1	=	NC_054598.1	0
Chromosome 3S	CM015638.1	=	NC_054599.1	0
Chromosome 4D	CM015639.1	=	NC_054600.1	0
Chromosome 4S	CM015640.1	=	NC_054601.1	0
Chromosome 5D	CM015641.1	=	NC_054602.1	0
Chromosome 5S	CM015642.1	=	NC_054603.1	0
Chromosome 6D	CM015643.1	=	NC_054604.1	0
Chromosome 6S	CM015644.1	=	NC_054605.1	0
Chromosome 7D	CM015645.1	=	NC_054606.1	0
Chromosome 7S	CM015646.1	=	NC_054607.1	0
Chromosome 8D	CM015647.1	=	NC_054608.1	0
Chromosome 8S	CM015648.1	=	NC_054609.1	0
unplaced	n/a	n/a	n/a	138

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	527,895,757	154	523,585,557	35,629,462	54
Chromosome 1D	49,856,174	1	49,642,249	49,856,174	6
Chromosome 1S	30,169,828	1	30,033,115	30,169,828	4
Chromosome 2D	43,614,719	1	43,297,878	43,614,719	3
Chromosome 2S	34,707,362	1	34,399,138	34,707,362	5
Chromosome 3D	39,900,371	1	39,817,169	39,900,371	4
Chromosome 3S	27,832,763	1	27,427,110	27,832,763	2
Chromosome 4D	35,629,462	1	35,580,908	35,629,462	2
Chromosome 4S	27,577,207	1	27,326,373	27,577,207	7
Chromosome 5D	35,798,223	1	35,262,862	35,798,223	3
Chromosome 5S	32,113,326	1	31,205,117	32,113,326	5
Chromosome 6D	38,364,907	1	37,680,286	38,364,907	6
Chromosome 6S	22,373,256	1	22,341,860	22,373,256	1
Chromosome 7D	26,765,518	1	26,603,426	26,765,518	1
Chromosome 7S	21,889,424	1	21,823,403	21,889,424	1
Chromosome 8D	36,225,362	1	36,090,009	36,225,362	2
Chromosome 8S	19,962,766	1	19,939,565	19,962,766	2
unplaced	5,115,089	138	5,115,089	46,982	0

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Jm3101_v1.0

See Genome Information for Juglans microcarpa x Juglans regia

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

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