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ASM483223v1

Organism name:
Methylophaga sp. SB9B (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: SB9B
BioSample:
SAMN11431367
BioProject:
PRJNA309469
Submitter:
Bose Institute
Date:
2019/04/23
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_004832235.1 (latest)
RefSeq assembly accession:
GCF_004832235.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
SSXS01
Assembly method:
SPAdes v. 3.13.0
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
IonTorrent

IDs: 2596681 [UID] 9403758 [GenBank] 9498318 [RefSeq]

See Genome Information for Methylophaga sp. SB9B

History (Show revision history)

Comment

Bacteria and source DNA available from MTCC12599, Microbial Type Culture Collection and Gene Bank (MTCC), Chandigarh, India
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::04/18/2019 12:30:45
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.8
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,077
CDSs (total)::3,028
Genes (coding)::2,740
CDSs (with protein)::2,740
Genes (RNA)::49
rRNAs::2, 1, 5 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::4 (23S)
tRNAs::37
ncRNAs::4
Pseudo Genes (total)::288
CDSs (without protein)::288
Pseudo Genes (ambiguous residues)::1 of 288
Pseudo Genes (frameshifted)::262 of 288
Pseudo Genes (incomplete)::23 of 288
Pseudo Genes (internal stop)::11 of 288
Pseudo Genes (multiple problems)::8 of 288
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,086,445
Total ungapped length3,083,338
Gaps between scaffolds0
Number of scaffolds123
Scaffold N50227,587
Scaffold L505
Number of contigs155
Contig N5096,265
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)123

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,086,4451233,083,338227,587320

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Methylophaga sp. SB9BMethylophaga sp. SB9B

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000260985.3Methylophaga nitratireducenticrescenstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.9256.0455.08

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna