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NGI_Narwhal_1

Organism name:
Monodon monoceros (narwhal)
Infraspecific name:
Ecotype: Baffin Bay Population
Isolate:
NGI
Sex:
male
BioSample:
SAMN10872456
BioProject:
PRJNA520934
Submitter:
The Narwhal Genome Initiative
Date:
2019/05/06
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_005190385.2 (replaced)
RefSeq assembly accession:
GCF_005190385.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
SIHG01
Assembly method:
SuperNova v. 2.0.0; HiRise v. 2.1.6; PBSuite v. 15.8.25
Expected final version:
no
Genome coverage:
42.0x
Sequencing technology:
10X Genomics; Dovetail Chicago; Dovetail Hi-C; PacBio

IDs: 2790771 [UID] 9825778 [GenBank] 10025238 [RefSeq]

See Genome Information for Monodon monoceros

There are 5 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,355,574,979
Total ungapped length2,344,106,029
Gaps between scaffolds0
Number of scaffolds6,972
Scaffold N50107,566,389
Scaffold L509
Number of contigs25,295
Contig N50255,327
Contig L502,676
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)6,972

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,355,574,9796,9722,344,106,029107,566,38918,3230