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ASM528145v1

Organism name:
Acinetobacter nosocomialis M2 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: M2
BioSample:
SAMN02471153
BioProject:
PRJNA541289
Submitter:
Des Moines University
Date:
2019/05/13
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_005281455.1 (latest)
RefSeq assembly accession:
GCF_005281455.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Canu v. v1.8; Racon v. v1.3.2; Unicycler v. v0.4.7
Expected final version:
yes
Genome coverage:
720.0x
Sequencing technology:
Oxford Nanopore MiniION; Illumina MiSeq

IDs: 2820211 [UID] 9895988 [GenBank] 9986398 [RefSeq]

See Genome Information for Acinetobacter nosocomialis

There are 455 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Michael Carruthers Ph.D., Des Moines University College of Osteopathic Medicine, 3200 Grand Avenue RH269, ... Des Moines, IA 50312  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_005281455.1-RS_2024_03_28
Annotation Date::03/28/2024 04:47:50
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,581
CDSs (total)::3,486
Genes (coding)::3,453
CDSs (with protein)::3,453
Genes (RNA)::95
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::73
ncRNAs::4
Pseudo Genes (total)::33
CDSs (without protein)::33
Pseudo Genes (ambiguous residues)::0 of 33
Pseudo Genes (frameshifted)::16 of 33
Pseudo Genes (incomplete)::12 of 33
Pseudo Genes (internal stop)::11 of 33
Pseudo Genes (multiple problems)::6 of 33
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,824,973
Total ungapped length3,824,973
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_005281465.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP040105.1=NZ_CP040105.1

Assembly statistics

MoleculeTotal
Length
Chromosome 3,824,973

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Acinetobacter nosocomialis M2Acinetobacter nosocomialis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000368085.1Acinetobacter nosocomialis NIPH 2119type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000368085.1Acinetobacter nosocomialistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.7491.4490.12
Best-match type97.7491.4490.12

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna