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TAMU_Nfulva_1.0

  • Anomalous assembly.
Organism name:
Nylanderia fulva (ants)
Isolate:
TAMU-Nful-2015
BioSample:
SAMN10848236
BioProject:
PRJNA517949
Submitter:
Global Ant Genomics Alliance
Date:
2019/05/13
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_005281655.1 (replaced)
RefSeq assembly accession:
GCF_005281655.1 (replaced)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
SGBU01
Assembly method:
CANU v. 1.7; SSPACE v. 3
Expected final version:
yes
Genome coverage:
150.0x
Sequencing technology:
Illumina MiSeq; Illumina TruSeq Synthetic Long-Read; Oxford Nanopore MinION; PacBio Sequel

IDs: 2820421 [UID] 9896338 [GenBank] 9962658 [RefSeq]

See Genome Information for Nylanderia fulva

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added to the contigs on February 2020
In May 2022 27 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length375,107,333
Total ungapped length373,278,423
Gaps between scaffolds0
Number of scaffolds2,869
Scaffold N50443,094
Scaffold L50131
Number of contigs3,809
Contig N50320,712
Contig L50169
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)2,869

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced375,107,3332,869373,278,423443,0949400