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Source database (GenBank or RefSeq) File type

Setaria_viridis_v2.0

Organism name:

Setaria viridis (monocots)

Infraspecific name:

Cultivar: A10

BioSample:

SAMN05660902

BioProject:

PRJNA265547

Submitter:

DOE Joint Genome Institute

Date:

2019/05/14

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_005286985.1 (latest)

RefSeq assembly accession:

GCF_005286985.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome Pltd

Data displayed for RefSeq version

WGS Project:

SNSE01

Assembly method:

Mecat v. 1.2

Genome coverage:

118x

Sequencing technology:

PacBio Sequel

IDs: 2834741 [UID] 9918748 [GenBank] 19639038 [RefSeq]

See Genome Information for Setaria viridis

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_005286985.1	≠	GCF_005286985.1	Setaria_viridis_v2.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	395,869,604
Total ungapped length	395,259,604
Gaps between scaffolds	61
Number of scaffolds	76
Scaffold N50	11,217,222
Scaffold L50	11
Number of contigs	76
Contig N50	11,217,222
Contig L50	11
Total number of chromosomes and plasmids	10
Number of component sequences (WGS or clone)	76

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM016552.1	=	NC_048263.1	0
Chromosome 2	CM016553.1	=	NC_048264.1	0
Chromosome 3	CM016554.1	=	NC_048265.1	0
Chromosome 4	CM016555.1	=	NC_048266.1	0
Chromosome 5	CM016556.1	=	NC_048267.1	0
Chromosome 6	CM016557.1	=	NC_048268.1	0
Chromosome 7	CM016558.1	=	NC_048269.1	0
Chromosome 8	CM016559.1	=	NC_048270.1	0
Chromosome 9	CM016560.1	=	NC_048271.1	0
unplaced	n/a	n/a	n/a	5

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Unspanned Gaps
All	395,731,502	75	395,121,502	11,217,222	61
Chromosome 1	41,732,233	5	41,692,233	24,610,593	4
Chromosome 2	47,849,963	5	47,809,963	25,938,364	4
Chromosome 3	50,382,502	9	50,302,502	10,757,728	8
Chromosome 4	39,677,845	4	39,647,845	15,338,468	3
Chromosome 5	46,702,114	9	46,622,114	11,217,222	8
Chromosome 6	36,371,416	13	36,251,416	7,779,880	12
Chromosome 7	35,460,007	4	35,430,007	22,481,077	3
Chromosome 8	40,988,899	14	40,858,899	5,310,778	13
Chromosome 9	56,381,885	7	56,321,885	12,201,311	6
unplaced	184,638	5	184,638	46,909	0

Assembly

Genome Assembly

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Download Assembly

Setaria_viridis_v2.0

See Genome Information for Setaria viridis

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear