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pea_aphid_22Mar2018_4r6ur

  • Anomalous assembly.
Organism name:
Acyrthosiphon pisum (pea aphid)
Isolate:
AL4f
BioSample:
SAMN10253041
BioProject:
PRJNA496478
Submitter:
The University of Texas at Austin
Date:
2019/05/20
Assembly level:
Chromosome
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_005508785.1 (replaced)
RefSeq assembly accession:
GCF_005508785.1 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
SDIB01
Assembly method:
HiRise v. Mar-2018
Expected final version:
no
Genome coverage:
789.41x
Sequencing technology:
Illumina HiSeq

IDs: 2938431 [UID] 10135008 [GenBank] 10963578 [RefSeq]

See Genome Information for Acyrthosiphon pisum

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

In May 2022 692 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length541,137,574
Total ungapped length499,739,063
Gaps between scaffolds0
Number of scaffolds21,920
Scaffold N50132,544,852
Scaffold L502
Number of contigs68,187
Contig N5025,858
Contig L504,765
Total number of chromosomes and plasmids5
Number of component sequences (WGS or clone)21,920

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_005510545.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome XCM016665.1=NC_042493.10
Chromosome A1CM016664.1=NC_042494.10
Chromosome A2CM016666.1=NC_042495.10
Chromosome A3CM016667.1=NC_042496.10
unplacedn/an/an/a21,915

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All541,120,60321,919499,722,092132,544,85246,2670
Chromosome X132,544,8521123,345,804132,544,85213,8290
Chromosome A1170,740,6451163,716,967170,740,64511,7560
Chromosome A2119,541,7631114,113,783119,541,7639,0030
Chromosome A342,333,646141,134,34842,333,6462,2790
unplaced75,959,69721,91557,411,19015,9219,4000
MoleculeTotal
Length
Mitochondrion MT16,971