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Source database (GenBank or RefSeq) File type

lonStrDom2

Organism name:

Lonchura striata domestica (Bengalese finch)

Isolate:

Mets1

Sex:

male

BioSample:

SAMN11521339

BioProject:

PRJNA369279

Submitter:

HHMI/UCSF

Date:

2019/06/05

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_005870125.1 (latest)

RefSeq assembly accession:

GCF_005870125.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Different: chromosome MT.

Data displayed for RefSeq version

WGS Project:

SWKX01

Assembly method:

AllPaths v. JAN-2015; HiRise v. NOV-2018

Expected final version:

yes

Reference guided assembly:

GCA_002197715.1

Genome coverage:

151.0x

Sequencing technology:

Illumina HiSeq

IDs: 3288811 [UID] 10889208 [GenBank] 11195318 [RefSeq]

See Genome Information for Lonchura striata

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_005870125.1	≠	GCF_005870125.1	lonStrDom2	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	1,060,269,806
Total ungapped length	1,029,018,290
Gaps between scaffolds	0
Number of scaffolds	2,015
Scaffold N50	71,975,342
Scaffold L50	6
Number of contigs	33,371
Contig N50	100,423
Contig L50	2,867
Total number of chromosomes and plasmids	32
Number of component sequences (WGS or clone)	2,015

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM016763.1	=	NC_042565.1	0
Chromosome 1A	CM016792.1	=	NC_042566.1	0
Chromosome 2	CM016764.1	=	NC_042567.1	0
Chromosome 3	CM016765.1	=	NC_042568.1	0
Chromosome 4	CM016766.1	=	NC_042569.1	0
Chromosome 4A	CM016793.1	=	NC_042570.1	0
Chromosome 5	CM016767.1	=	NC_042571.1	0
Chromosome 6	CM016768.1	=	NC_042572.1	0
Chromosome 7	CM016769.1	=	NC_042573.1	0
Chromosome 8	CM016770.1	=	NC_042574.1	0
Chromosome 9	CM016771.1	=	NC_042575.1	0
Chromosome 10	CM016772.1	=	NC_042576.1	0
Chromosome 11	CM016773.1	=	NC_042577.1	0
Chromosome 12	CM016774.1	=	NC_042578.1	0
Chromosome 13	CM016775.1	=	NC_042579.1	0
Chromosome 14	CM016776.1	=	NC_042580.1	0
Chromosome 15	CM016777.1	=	NC_042581.1	0
Chromosome 17	CM016778.1	=	NC_042582.1	0
Chromosome 18	CM016779.1	=	NC_042583.1	0
Chromosome 19	CM016780.1	=	NC_042584.1	0
Chromosome 20	CM016781.1	=	NC_042585.1	0
Chromosome 21	CM016782.1	=	NC_042586.1	0
Chromosome 22	CM016783.1	=	NC_042587.1	0
Chromosome 23	CM016784.1	=	NC_042588.1	0
Chromosome 24	CM016785.1	=	NC_042589.1	0
Chromosome 25	CM016786.1	=	NC_042590.1	0
Chromosome 26	CM016787.1	=	NC_042591.1	0
Chromosome 27	CM016788.1	=	NC_042592.1	0
Chromosome 28	CM016789.1	=	NC_042593.1	0
Chromosome 29	CM016790.1	=	NC_042594.1	0
Chromosome Z	CM016791.1	=	NC_042595.1	0
unplaced	n/a	n/a	n/a	1,983

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,060,252,993	2,014	1,029,001,477	71,975,342	31,356
Chromosome 1	114,882,317	1	113,714,707	114,882,317	2,078
Chromosome 1A	72,268,309	1	71,273,055	72,268,309	1,510
Chromosome 2	152,210,352	1	150,536,333	152,210,352	2,780
Chromosome 3	113,230,790	1	111,998,659	113,230,790	2,016
Chromosome 4	71,975,342	1	71,100,538	71,975,342	1,369
Chromosome 4A	20,015,810	1	19,754,186	20,015,810	496
Chromosome 5	62,001,665	1	61,391,622	62,001,665	1,239
Chromosome 6	35,765,071	1	35,449,558	35,765,071	722
Chromosome 7	38,543,002	1	37,951,502	38,543,002	903
Chromosome 8	30,981,424	1	30,631,869	30,981,424	687
Chromosome 9	25,959,029	1	25,463,660	25,959,029	681
Chromosome 10	21,238,631	1	20,580,972	21,238,631	637
Chromosome 11	21,163,684	1	20,807,096	21,163,684	565
Chromosome 12	20,959,059	1	20,693,842	20,959,059	482
Chromosome 13	18,629,662	1	18,216,116	18,629,662	564
Chromosome 14	16,766,037	1	16,527,468	16,766,037	463
Chromosome 15	14,322,862	1	14,070,129	14,322,862	428
Chromosome 17	11,552,688	1	11,317,804	11,552,688	407
Chromosome 18	11,854,819	1	11,561,373	11,854,819	515
Chromosome 19	11,343,146	1	11,113,759	11,343,146	346
Chromosome 20	15,151,729	1	14,872,402	15,151,729	538
Chromosome 21	8,329,815	1	7,740,421	8,329,815	552
Chromosome 22	5,629,200	1	4,693,055	5,629,200	758
Chromosome 23	7,431,096	1	6,956,570	7,431,096	574
Chromosome 24	7,709,808	1	7,394,506	7,709,808	482
Chromosome 25	3,649,918	1	3,047,874	3,649,918	481
Chromosome 26	7,149,050	1	6,773,184	7,149,050	488
Chromosome 27	6,327,419	1	5,417,777	6,327,419	674
Chromosome 28	6,421,163	1	5,810,333	6,421,163	522
Chromosome 29	3,381,876	1	2,591,690	3,381,876	526
Chromosome Z	73,589,325	1	72,490,059	73,589,325	1,689
unplaced	29,818,895	1,983	17,059,358	99,891	5,184

Assembly

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lonStrDom2

See Genome Information for Lonchura striata

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear