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meerkat_22Aug2017_6uvM2_HiC

Organism name:
Suricata suricatta (meerkat)
Isolate:
VVHF042
BioSample:
SAMN11840572
BioProject:
PRJNA540846
Submitter:
DNA Zoo
Date:
2019/07/03
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_006229205.1 (latest)
RefSeq assembly accession:
GCF_006229205.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VCRZ01
Assembly method:
3-D DNA Pipeline v. AUGUST-2017
Expected final version:
yes
Genome coverage:
50.0x
Sequencing technology:
Illumina HiSeq; Illumina X10

IDs: 3592791 [UID] 11602568 [GenBank] 11840368 [RefSeq]

See Genome Information for Suricata suricatta

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,353,578,744
Total ungapped length2,346,940,644
Gaps between scaffolds0
Number of scaffolds63,791
Scaffold N50141,453,419
Scaffold L508
Number of contigs129,036
Contig N5075,409
Contig L508,917
Total number of chromosomes and plasmids18
Number of component sequences (WGS or clone)63,791

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_006229215.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM016971.1=NC_043700.10
Chromosome 2CM016972.1=NC_043701.10
Chromosome 3CM016973.1=NC_043702.10
Chromosome 4CM016974.1=NC_043703.10
Chromosome 5CM016975.1=NC_043704.10
Chromosome 6CM016976.1=NC_043705.10
Chromosome 7CM016977.1=NC_043706.10
Chromosome 8CM016978.1=NC_043707.10
Chromosome 9CM016979.1=NC_043708.10
Chromosome 10CM016980.1=NC_043709.10
Chromosome 11CM016981.1=NC_043710.10
Chromosome 12CM016982.1=NC_043711.10
Chromosome 13CM016983.1=NC_043712.10
Chromosome 14CM016984.1=NC_043713.10
Chromosome 15CM016985.1=NC_043714.10
Chromosome 16CM016986.1=NC_043715.10
Chromosome 17CM016987.1=NC_043716.10
Chromosome XCM016988.1=NC_043717.10
unplacedn/an/an/a63,773

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All2,353,578,74463,7912,346,940,644141,453,41965,2450
Chromosome 1194,221,0781193,706,078194,221,0785,0940
Chromosome 2186,708,1061186,223,306186,708,1064,7760
Chromosome 3175,818,6731175,355,573175,818,6734,5790
Chromosome 4164,972,9241164,588,124164,972,9243,7960
Chromosome 5156,026,0451155,548,045156,026,0454,6480
Chromosome 6147,861,7811147,462,381147,861,7813,9220
Chromosome 7145,467,9771145,046,877145,467,9774,1310
Chromosome 8141,453,4191141,055,019141,453,4193,9240
Chromosome 9140,082,9551139,699,255140,082,9553,7930
Chromosome 10137,167,9011136,776,401137,167,9013,8510
Chromosome 11109,239,7581108,889,658109,239,7583,4370
Chromosome 12106,191,8481105,833,648106,191,8483,5340
Chromosome 1390,215,208189,942,40890,215,2082,7000
Chromosome 1489,425,930189,165,03089,425,9302,5730
Chromosome 1578,599,426178,392,82678,599,4262,0300
Chromosome 1659,306,649159,071,04959,306,6492,3120
Chromosome 1758,591,448158,385,44858,591,4482,0400
Chromosome X111,476,2101111,089,310111,476,2103,6930
unplaced60,751,40863,77360,710,2089014120