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Source database (GenBank or RefSeq) File type

ASM634580v1

Organism name:

Octopus sinensis (East Asian common octopus)

Isolate:

Ov201803

BioSample:

SAMN11633729

BioProject:

PRJNA541812

Submitter:

Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences

Date:

2019/06/17

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_006345805.1 (latest)

RefSeq assembly accession:

GCF_006345805.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

VCDQ01

Assembly method:

CANU v. 1.5; Wtdbg v. 1.1.006

Expected final version:

yes

Genome coverage:

285.0x

Sequencing technology:

PacBio; Illumina

IDs: 3456761 [UID] 11231918 [GenBank] 11530438 [RefSeq]

See Genome Information for Octopus sinensis

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_006345805.1	≠	GCF_006345805.1	ASM634580v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	2,719,151,902
Total ungapped length	2,718,442,880
Gaps between scaffolds	0
Number of scaffolds	13,516
Scaffold N50	105,892,736
Scaffold L50	10
Number of contigs	20,491
Contig N50	490,217
Contig L50	1,329
Total number of chromosomes and plasmids	31
Number of component sequences (WGS or clone)	13,516

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Linkage Group LG1	CM016859.1	=	NC_042997.1	0
Linkage Group LG2	CM016860.1	=	NC_042998.1	0
Linkage Group LG3	CM016861.1	=	NC_042999.1	0
Linkage Group LG4	CM016862.1	=	NC_043000.1	0
Linkage Group LG5	CM016863.1	=	NC_043001.1	0
Linkage Group LG6	CM016864.1	=	NC_043002.1	0
Linkage Group LG7	CM016865.1	=	NC_043003.1	0
Linkage Group LG8	CM016866.1	=	NC_043004.1	0
Linkage Group LG9	CM016867.1	=	NC_043005.1	0
Linkage Group LG10	CM016868.1	=	NC_043006.1	0
Linkage Group LG11	CM016869.1	=	NC_043007.1	0
Linkage Group LG12	CM016870.1	=	NC_043008.1	0
Linkage Group LG13	CM016871.1	=	NC_043009.1	0
Linkage Group LG14	CM016872.1	=	NC_043010.1	0
Linkage Group LG15	CM016873.1	=	NC_043011.1	0
Linkage Group LG16	CM016874.1	=	NC_043012.1	0
Linkage Group LG17	CM016875.1	=	NC_043013.1	0
Linkage Group LG18	CM016876.1	=	NC_043014.1	0
Linkage Group LG19	CM016877.1	=	NC_043015.1	0
Linkage Group LG20	CM016878.1	=	NC_043016.1	0
Linkage Group LG21	CM016879.1	=	NC_043017.1	0
Linkage Group LG22	CM016880.1	=	NC_043018.1	0
Linkage Group LG23	CM016881.1	=	NC_043019.1	0
Linkage Group LG24	CM016882.1	=	NC_043020.1	0
Linkage Group LG25	CM016883.1	=	NC_043021.1	0
Linkage Group LG26	CM016884.1	=	NC_043022.1	0
Linkage Group LG27	CM016885.1	=	NC_043023.1	0
Linkage Group LG28	CM016886.1	=	NC_043024.1	0
Linkage Group LG29	CM016887.1	=	NC_043025.1	0
Linkage Group LG30	CM016888.1	=	NC_043026.1	0
unplaced	n/a	n/a	n/a	13,485

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,719,136,158	13,515	2,718,427,136	105,892,736	6,975
Linkage Group LG1	213,406,131	1	213,359,731	213,406,131	464
Linkage Group LG2	207,928,902	1	207,884,702	207,928,902	442
Linkage Group LG3	174,423,281	1	174,388,181	174,423,281	351
Linkage Group LG4	164,836,235	1	164,795,335	164,836,235	409
Linkage Group LG5	135,913,566	1	135,876,966	135,913,566	366
Linkage Group LG6	120,472,873	1	120,436,973	120,472,873	359
Linkage Group LG7	117,540,060	1	117,508,660	117,540,060	314
Linkage Group LG8	107,269,306	1	107,238,206	107,269,306	311
Linkage Group LG9	109,703,381	1	109,674,081	109,703,381	293
Linkage Group LG10	105,892,736	1	105,861,336	105,892,736	314
Linkage Group LG11	77,502,973	1	77,475,173	77,502,973	278
Linkage Group LG12	79,792,878	1	79,775,578	79,792,878	173
Linkage Group LG13	72,296,471	1	72,271,471	72,296,471	250
Linkage Group LG14	68,403,164	1	68,381,464	68,403,164	217
Linkage Group LG15	67,901,367	1	67,880,925	67,901,367	191
Linkage Group LG16	59,466,961	1	59,443,961	59,466,961	230
Linkage Group LG17	59,356,462	1	59,335,162	59,356,462	213
Linkage Group LG18	55,351,117	1	55,327,817	55,351,117	233
Linkage Group LG19	53,884,001	1	53,865,401	53,884,001	186
Linkage Group LG20	32,976,114	1	32,956,414	32,976,114	197
Linkage Group LG21	34,119,079	1	34,105,079	34,119,079	140
Linkage Group LG22	30,097,204	1	30,081,704	30,097,204	155
Linkage Group LG23	32,879,656	1	32,857,404	32,879,656	138
Linkage Group LG24	31,203,755	1	31,189,655	31,203,755	141
Linkage Group LG25	28,926,792	1	28,916,892	28,926,792	99
Linkage Group LG26	25,544,736	1	25,534,436	25,544,736	103
Linkage Group LG27	21,331,139	1	21,319,539	21,331,139	116
Linkage Group LG28	20,263,137	1	20,253,937	20,263,137	92
Linkage Group LG29	17,062,404	1	17,051,204	17,062,404	112
Linkage Group LG30	15,106,159	1	15,095,631	15,106,159	88
unplaced	378,284,118	13,485	378,284,118	42,923	0

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ASM634580v1

See Genome Information for Octopus sinensis

Pathogen Detection Resources

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear