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ASM638425v1

Organism name:
Haemophilus seminalis (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: SZY H1
BioSample:
SAMN11775792
BioProject:
PRJNA543730
Submitter:
Tradictional Chinese medicine University
Date:
2019/06/21
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_006384255.1 (latest)
RefSeq assembly accession:
GCF_006384255.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VCED01
Assembly method:
SOAPdenovo v. JAN-2019
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina HiSeq

IDs: 3522221 [UID] 11368828 [GenBank] 11475828 [RefSeq]

See Genome Information for Haemophilus seminalis

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,061,978
Total ungapped length2,061,968
Gaps between scaffolds0
Number of scaffolds21
Scaffold N50389,275
Scaffold L503
Number of contigs22
Contig N50389,275
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)21

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,061,978212,061,968389,27510

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Haemophilus seminalisHaemophilus seminalis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004368535.1Haemophilus haemolyticustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type93.8470.7279.75

ANI result

Taxonomy check statusBest match statusComment
OKmismatchAssembly is the type-strain, mismatch is within genus and expected