U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM654677v1

Organism name:
Lysobacter aestuarii (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: JCM 31130
BioSample:
SAMN12136314
BioProject:
PRJNA550977
Submitter:
Inner Mongolia University
Date:
2019/07/02
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_006546775.1 (latest)
RefSeq assembly accession:
GCF_006546775.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VICE01
Assembly method:
Celera Assembler v. 2.3
Expected final version:
yes
Genome coverage:
330.0x
Sequencing technology:
Illumina

IDs: 3592671 [UID] 11602368 [GenBank] 11698258 [RefSeq]

See Genome Information for Lysobacter aestuarii

History (Show revision history)

Comment

Bacteria and source DNA available from JCM
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/27/2019 04:50:26
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.8
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,212
CDSs (total)::3,157
Genes (coding)::3,126
CDSs (with protein)::3,126
Genes (RNA)::55
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::48
ncRNAs::4
Pseudo Genes (total)::31
CDSs (without protein)::31
Pseudo Genes (ambiguous residues)::0 of 31
Pseudo Genes (frameshifted)::8 of 31
Pseudo Genes (incomplete)::22 of 31
Pseudo Genes (internal stop)::3 of 31
Pseudo Genes (multiple problems)::2 of 31
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,491,084
Total ungapped length3,491,084
Number of contigs156
Contig N5041,908
Contig L5027
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)156

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,491,0841563,491,08441,90800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lysobacter aestuariiLysobacter aestuarii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014145325.1Lysobacter spongiaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type92.2186.5082.95

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected