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ASM757082v1

Organism name:
Pleionea sediminis (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: S1-5-21
BioSample:
SAMN11469766
BioProject:
PRJNA533851
Submitter:
Third Institute of Oceanography, SOA
Date:
2019/07/26
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_007570825.1 (latest)
RefSeq assembly accession:
GCF_007570825.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
SUNB01
Assembly method:
SPAdes v. 3.8.0
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina HiSeq

IDs: 4119141 [UID] 12697798 [GenBank] 12996568 [RefSeq]

See Genome Information for Pleionea sediminis

History (Show revision history)

Comment

Bacteria and source DNA available from KCTC and MCCC

Global statistics

Total sequence length5,194,783
Total ungapped length5,194,783
Number of contigs26
Contig N50917,035
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)26

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,194,783265,194,783917,03500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pleionea sediminisPleionea sediminis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_022669015.1Colwellia maritimatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.480.090.09

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected