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Source database (GenBank or RefSeq) File type

ASM765513v2

Organism name:

Punica granatum (pomegranate)

Isolate:

Tunisia-2019

BioSample:

SAMN05193489

BioProject:

PRJNA324150

Submitter:

Chinese Academy of Agricultural Sciences

Date:

2019/10/22

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_007655135.2 (latest)

RefSeq assembly accession:

GCF_007655135.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome Pltd

Data displayed for RefSeq version

WGS Project:

MABG02

Assembly method:

Canu v. 1.5

Expected final version:

yes

Genome coverage:

60.0x

Sequencing technology:

PacBio RSII

IDs: 4983011 [UID] 14711898 [GenBank] 14904888 [RefSeq]

See Genome Information for Punica granatum

Pathogen Detection Resources

There are 10 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_007655135.2	≠	GCF_007655135.1	ASM765513v2	Chromosome	Latest GenBank, Latest RefSeq
GCA_007655135.1	n/a	n/a	ASM765513v1	Scaffold	Replaced GenBank

Comment

Global statistics

Total sequence length	320,494,280
Total ungapped length	320,475,480
Gaps between scaffolds	0
Number of scaffolds	474
Scaffold N50	39,957,110
Scaffold L50	4
Number of contigs	662
Contig N50	4,489,929
Contig L50	21
Total number of chromosomes and plasmids	9
Number of component sequences (WGS or clone)	474

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM018611.1	=	NC_045127.1	0
Chromosome 2	CM018612.1	=	NC_045128.1	0
Chromosome 3	CM018613.1	=	NC_045129.1	0
Chromosome 4	CM018614.1	=	NC_045130.1	0
Chromosome 5	CM018615.1	=	NC_045131.1	0
Chromosome 6	CM018616.1	=	NC_045132.1	0
Chromosome 7	CM018617.1	=	NC_045133.1	0
Chromosome 8	CM018618.1	=	NC_045134.1	0
unplaced	n/a	n/a	n/a	465

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	320,335,647	473	320,316,847	39,957,110	188
Chromosome 1	55,558,335	1	55,554,035	55,558,335	43
Chromosome 2	44,568,936	1	44,565,436	44,568,936	35
Chromosome 3	39,957,110	1	39,954,610	39,957,110	25
Chromosome 4	40,126,936	1	40,125,436	40,126,936	15
Chromosome 5	31,533,359	1	31,531,559	31,533,359	18
Chromosome 6	28,327,254	1	28,325,254	28,327,254	20
Chromosome 7	28,781,120	1	28,779,220	28,781,120	19
Chromosome 8	27,994,861	1	27,993,561	27,994,861	13
unplaced	23,487,736	465	23,487,736	66,592	0

Assembly

Genome Assembly

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Download Assembly

ASM765513v2

See Genome Information for Punica granatum

Pathogen Detection Resources

There are 10 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear