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ASM779509v1

Organism name:
Luteimonas granuli (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: Gr-4
BioSample:
SAMN12358944
BioProject:
PRJNA556523
Submitter:
Hankyong National University
Date:
2019/08/01
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_007795095.1 (latest)
RefSeq assembly accession:
GCF_007795095.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMART denovo v. 1.0
Expected final version:
yes
Genome coverage:
30.0x
Sequencing technology:
Oxford Nanopore MiniION

IDs: 4237831 [UID] 12951358 [GenBank] 13034458 [RefSeq]

See Genome Information for Luteimonas granuli

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::05/05/2023 03:48:02
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,715
CDSs (total)::2,662
Genes (coding)::2,489
CDSs (with protein)::2,489
Genes (RNA)::53
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::46
ncRNAs::4
Pseudo Genes (total)::173
CDSs (without protein)::173
Pseudo Genes (ambiguous residues)::0 of 173
Pseudo Genes (frameshifted)::103 of 173
Pseudo Genes (incomplete)::78 of 173
Pseudo Genes (internal stop)::5 of 173
Pseudo Genes (multiple problems)::11 of 173
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,917,404
Total ungapped length2,917,404
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_007795105.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP042218.1=NZ_CP042218.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,917,404

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Luteimonas granuliLuteimonas granuli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014652935.1Luteimonas padinaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.7165.2061.03

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected