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Source database (GenBank or RefSeq) File type

Gossypium_hirsutum_v2.1

Organism name:

Gossypium hirsutum (cotton)

Isolate:

1008001.06

BioSample:

SAMN11351207

BioProject:

PRJNA515894

Submitter:

HudsonAlpha Genome Sequencing Center

Date:

2021/02/25

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_007990345.1 (latest)

RefSeq assembly accession:

GCF_007990345.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosomes MT and Pltd

Data displayed for RefSeq version

WGS Project:

VKGJ01

Assembly method:

Mecat v. 1.0

Genome coverage:

94.06x

Sequencing technology:

PacBio RSII

IDs: 9323231 [UID] 25136338 [GenBank] 25517078 [RefSeq]

See Genome Information for Gossypium hirsutum

Pathogen Detection Resources

There are 12 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_007990345.1	≠	GCF_007990345.1	Gossypium_hirsutum_v2.1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	2,306,070,423
Total ungapped length	2,303,159,423
Gaps between scaffolds	6
Number of scaffolds	1,033
Scaffold N50	108,141,443
Scaffold L50	10
Number of contigs	6,735
Contig N50	783,933
Contig L50	789
Total number of chromosomes and plasmids	28
Number of component sequences (WGS or clone)	6,735

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome A01	CM017662.1	=	NC_053424.1	0
Chromosome A02	CM017663.1	=	NC_053425.1	0
Chromosome A03	CM017664.1	=	NC_053426.1	0
Chromosome A04	CM017665.1	=	NC_053427.1	0
Chromosome A05	CM017666.1	=	NC_053428.1	0
Chromosome A06	CM017667.1	=	NC_053429.1	0
Chromosome A07	CM017668.1	=	NC_053430.1	0
Chromosome A08	CM017669.1	=	NC_053431.1	0
Chromosome A09	CM017670.1	=	NC_053432.1	0
Chromosome A10	CM017671.1	=	NC_053433.1	0
Chromosome A11	CM017672.1	=	NC_053434.1	0
Chromosome A12	CM017673.1	=	NC_053435.1	0
Chromosome A13	CM017674.1	=	NC_053436.1	0
Chromosome D01	CM017675.1	=	NC_053437.1	0
Chromosome D02	CM017676.1	=	NC_053438.1	0
Chromosome D03	CM017677.1	=	NC_053439.1	0
Chromosome D04	CM017678.1	=	NC_053440.1	0
Chromosome D05	CM017679.1	=	NC_053441.1	0
Chromosome D06	CM017680.1	=	NC_053442.1	0
Chromosome D07	CM017681.1	=	NC_053443.1	0
Chromosome D08	CM017682.1	=	NC_053444.1	0
Chromosome D09	CM017683.1	=	NC_053445.1	0
Chromosome D10	CM017684.1	=	NC_053446.1	0
Chromosome D11	CM017685.1	=	NC_053447.1	0
Chromosome D12	CM017686.1	=	NC_053448.1	0
Chromosome D13	CM017687.1	=	NC_053449.1	0
unplaced	n/a	n/a	n/a	999

Molecule name	GenBank ID		RefSeq ID
Mitochondrion MT	JX944505.1	=	NC_027406.1
Chloroplast Pltd	DQ345959.1	=	NC_007944.1

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	2,305,241,538	1,031	2,302,330,538	108,141,443	5,702	6
Chromosome A01	119,761,559	1	119,594,059	119,761,559	335	0
Chromosome A02	108,141,443	1	107,987,443	108,141,443	308	0
Chromosome A03	113,693,209	1	113,520,209	113,693,209	346	0
Chromosome A04	89,180,822	1	89,032,822	89,180,822	296	0
Chromosome A05	111,098,753	1	110,949,253	111,098,753	299	0
Chromosome A06	128,195,338	2	127,999,838	128,172,208	371	1
Chromosome A07	98,902,531	1	98,754,531	98,902,531	296	0
Chromosome A08	127,495,948	1	127,313,448	127,495,948	365	0
Chromosome A09	85,335,976	1	85,233,476	85,335,976	205	0
Chromosome A10	118,182,687	1	118,022,687	118,182,687	320	0
Chromosome A11	124,181,751	1	124,002,251	124,181,751	359	0
Chromosome A12	109,474,314	1	109,301,314	109,474,314	346	0
Chromosome A13	111,646,624	1	111,494,624	111,646,624	304	0
Chromosome D01	65,205,008	1	65,148,008	65,205,008	114	0
Chromosome D02	72,186,496	2	72,111,996	72,163,955	129	1
Chromosome D03	54,956,272	2	54,907,272	54,935,822	78	1
Chromosome D04	58,229,188	1	58,170,188	58,229,188	118	0
Chromosome D05	66,484,719	2	66,398,219	66,411,031	153	1
Chromosome D06	66,684,206	1	66,627,706	66,684,206	113	0
Chromosome D07	59,440,927	2	59,377,927	59,389,598	106	1
Chromosome D08	69,427,147	1	69,355,647	69,427,147	143	0
Chromosome D09	54,445,796	1	54,397,796	54,445,796	96	0
Chromosome D10	68,089,194	1	68,035,694	68,089,194	107	0
Chromosome D11	72,823,778	1	72,760,278	72,823,778	127	0
Chromosome D12	63,255,146	1	63,193,146	63,255,146	124	0
Chromosome D13	65,099,798	2	65,023,298	65,073,919	133	1
unplaced	23,622,908	999	23,617,408	30,000	11	0

Molecule	Total Length
All	828,885
Mitochondrion MT	668,584
Chloroplast Pltd	160,301

Assembly

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Gossypium_hirsutum_v2.1

See Genome Information for Gossypium hirsutum

Pathogen Detection Resources

There are 12 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Assembly Unit Name
Primary Assembly
non-nuclear