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Source database (GenBank or RefSeq) File type

SLUC_FBN_1.2

Organism name:

Sander lucioperca (pikeperch)

Isolate:

FBNREF2018

Sex:

male

BioSample:

SAMN12618724

BioProject:

PRJNA561467

Submitter:

Leibniz Institute for Farm Animal Biology (FBN)

Date:

2020/08/14

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_008315115.2 (latest)

RefSeq assembly accession:

GCF_008315115.2 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

VTTG02

Assembly method:

MaSuRCA v. 3.4.0; Flye v. 2.5

Expected final version:

yes

Genome coverage:

360.0x

Sequencing technology:

PacBio; Illumina HiSeq

IDs: 7876691 [UID] 21590618 [GenBank] 21714828 [RefSeq]

See Genome Information for Sander lucioperca

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_008315115.2	≠	GCF_008315115.2	SLUC_FBN_1.2	Chromosome	Latest GenBank, Latest RefSeq
GCA_008315115.1	≠	GCF_008315115.1	SLUC_FBN_1	Scaffold	Replaced GenBank, Replaced RefSeq

Comment

Global statistics

Total sequence length	901,238,333
Total ungapped length	901,044,479
Gaps between scaffolds	0
Number of scaffolds	337
Scaffold N50	41,060,379
Scaffold L50	10
Number of contigs	870
Contig N50	6,663,498
Contig L50	39
Total number of chromosomes and plasmids	25
Number of component sequences (WGS or clone)	337

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM024490.1	=	NC_050173.1	0
Chromosome 2	CM024491.1	=	NC_050174.1	0
Chromosome 3	CM024492.1	=	NC_050175.1	0
Chromosome 4	CM024493.1	=	NC_050176.1	0
Chromosome 5	CM024494.1	=	NC_050177.1	0
Chromosome 6	CM024495.1	=	NC_050178.1	0
Chromosome 7	CM024496.1	=	NC_050179.1	0
Chromosome 8	CM024497.1	=	NC_050180.1	0
Chromosome 9	CM024498.1	=	NC_050181.1	0
Chromosome 10	CM024499.1	=	NC_050182.1	0
Chromosome 11	CM024500.1	=	NC_050183.1	0
Chromosome 12	CM024501.1	=	NC_050184.1	0
Chromosome 13	CM024502.1	=	NC_050185.1	0
Chromosome 14	CM024503.1	=	NC_050186.1	0
Chromosome 15	CM024504.1	=	NC_050187.1	0
Chromosome 16	CM024505.1	=	NC_050188.1	0
Chromosome 17	CM024506.1	=	NC_050189.1	0
Chromosome 18	CM024507.1	=	NC_050190.1	0
Chromosome 19	CM024508.1	=	NC_050191.1	0
Chromosome 20	CM024509.1	=	NC_050192.1	0
Chromosome 21	CM024510.1	=	NC_050193.1	0
Chromosome 22	CM024511.1	=	NC_050194.1	0
Chromosome 23	CM024512.1	=	NC_050195.1	0
Chromosome 24	CM024513.1	=	NC_050196.1	0
unplaced	n/a	n/a	n/a	312

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	901,221,791	336	901,027,937	41,060,379	533
Chromosome 1	54,393,628	1	54,387,468	54,393,628	26
Chromosome 2	49,407,545	1	49,402,160	49,407,545	20
Chromosome 3	46,650,914	1	46,637,384	46,650,914	25
Chromosome 4	45,680,744	1	45,677,476	45,680,744	19
Chromosome 5	44,882,888	1	44,876,519	44,882,888	33
Chromosome 6	43,593,786	1	43,588,921	43,593,786	21
Chromosome 7	43,407,925	1	43,403,630	43,407,925	20
Chromosome 8	42,481,147	1	42,475,596	42,481,147	25
Chromosome 9	42,110,657	1	42,103,971	42,110,657	26
Chromosome 10	41,060,379	1	41,057,732	41,060,379	15
Chromosome 11	40,547,616	1	40,541,399	40,547,616	25
Chromosome 12	39,468,189	1	39,451,507	39,468,189	27
Chromosome 13	36,967,914	1	36,964,630	36,967,914	18
Chromosome 14	35,005,408	1	34,990,805	35,005,408	22
Chromosome 15	34,132,438	1	34,129,083	34,132,438	19
Chromosome 16	32,127,401	1	32,121,694	32,127,401	25
Chromosome 17	31,684,469	1	31,671,998	31,684,469	48
Chromosome 18	31,569,713	1	31,564,444	31,569,713	22
Chromosome 19	31,482,333	1	31,476,838	31,482,333	19
Chromosome 20	29,809,037	1	29,807,224	29,809,037	10
Chromosome 21	29,610,596	1	29,607,927	29,610,596	14
Chromosome 22	29,179,064	1	29,164,260	29,179,064	23
Chromosome 23	20,929,051	1	20,924,581	20,929,051	12
Chromosome 24	20,298,344	1	20,295,107	20,298,344	8
unplaced	4,740,605	312	4,705,583	33,557	11

Assembly

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SLUC_FBN_1.2

See Genome Information for Sander lucioperca

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear