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UCSF_Mcou_1

Organism name:
Mastomys coucha (southern multimammate mouse)
Isolate:
ucsf_1
Sex:
male
BioSample:
SAMN07635206
BioProject:
PRJNA406979
Submitter:
University of California, San Francisco
Date:
2019/09/24
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_008632895.1 (latest)
RefSeq assembly accession:
GCF_008632895.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
VSBT01
Assembly method:
Meraculous v. 2.0.5; Ragout v. 2.0
Expected final version:
yes
Reference guided assembly:
GCA_000001635.2; GCA_000001895.4
Genome coverage:
73.0x
Sequencing technology:
Illumina HiSeq

IDs: 4721021 [UID] 14068078 [GenBank] 14639738 [RefSeq]

See Genome Information for Mastomys coucha

History (Show revision history)

Comment

Global statistics

Total sequence length2,507,184,835
Total ungapped length2,303,619,362
Gaps between scaffolds0
Number of scaffolds28
Scaffold N50118,621,203
Scaffold L508
Number of contigs146,741
Contig N5030,483
Contig L5022,479
Total number of chromosomes and plasmids3
Number of component sequences (WGS or clone)28

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_008632905.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome XCM018029.1=NC_045030.10
Chromosome YCM018030.1=NC_045031.10
unplacedn/an/an/a25

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All2,507,168,619272,303,603,146118,621,203146,7130
Chromosome X163,378,4871115,804,560163,378,48716,7820
Chromosome Y508,5311454,269508,531590
unplaced2,343,281,601252,187,344,317118,346,219129,8720
MoleculeTotal
Length
Mitochondrion MT16,216